Lentilactobacillus buchneri subsp. silagei CD034: LBUCD034_1897
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Entry
LBUCD034_1897 CDS
T02244
Symbol
uvrD
Name
(GenBank) DNA helicase II / ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
lbn
Lentilactobacillus buchneri subsp. silagei CD034
Pathway
lbn03420
Nucleotide excision repair
lbn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lbn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LBUCD034_1897 (uvrD)
03430 Mismatch repair
LBUCD034_1897 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lbn03400
]
LBUCD034_1897 (uvrD)
Enzymes [BR:
lbn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LBUCD034_1897 (uvrD)
DNA repair and recombination proteins [BR:
lbn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LBUCD034_1897 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
LBUCD034_1897 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C_2
AAA_19
UvrD_C
DUF1959
SLFN-g3_helicase
Viral_helicase1
AAA_16
AAA_30
DEAD
NPHP3_N
NACHT
Motif
Other DBs
NCBI-ProteinID:
AFS00888
UniProt:
J9W360
LinkDB
All DBs
Position
complement(1871178..1873472)
Genome browser
AA seq
764 aa
AA seq
DB search
MADNIKTQEQHHLDHVIDEIHISQKDLEQKIKATKRDVKDINRNFNNDVRLKTETYSGMM
ETAMSIRQQQQMLSERENRQEHAARELGTLNKLEQNPYFARIDFREGDEKRDETIYIGMA
SFTDRPDHYLIYDWRAPISSIYYNGGIGNVSYMTPDGEQTVDVKLKRQFQIENSKIKTVF
DTEEVVGDQMLLDALSNRSDTKMKSIVTTIQKEQNQIIRDTDSDLLFVQGSAGSGKTAAV
LQRVAFLLYQYRGNLHSGQIILFSPNQLFNDYINQVLPELGEQNMVQMTFYQYSSHRLPS
VQVETLSERFTEQLDKTAQKLTDVKGSLDYFRAVSAYANHLNKEDMRFRNLMFNGEILIP
KEKIAEIYYGFNENYNLRNRLESTKEELMKILNRKIHVEMRKKWVEDAVQNLSKEEIQQF
HAEGEEEILNADKEFKFLARRIVIKSFRKVQRQISRNHWLSINNQFVHMLKEMPKILNLA
DFGISNELWAEEIKATVGRLKKGRLSLADASSYIYLYDLMTGKRGDKDIRYLFIDEVQDY
SAFQLAFLKFSFPRARFTLLGDLNQAIFTHENSRKLLGELGSMFPEDKTRVVQLTKSYRS
TEQITNFTKHLLTNGENIIPFNRQGDLPHIYVKDGVDAAVEQVKQQSELNLADHETTAII
GKTLKECQELSGKLAELGVKSTLIRTENQRLVKGIIVVPSYLAKGLEFDSVIMWDASTAC
YPDESDRQLVYTICTRAMHRLTVVAVKSLSPIFETVPQDEYELN
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
atggcagataatatcaaaacacaagaacaacaccatttggaccacgtcattgatgaaatc
catatttcccaaaaggaccttgagcaaaagattaaggcaaccaagcgggatgttaaagat
atcaaccgcaatttcaacaatgacgttcggctcaaaactgagacgtacagcgggatgatg
gaaactgccatgtccattcggcagcaacagcaaatgctttctgaacgtgaaaatcgccag
gaacatgccgcccgagaacttgggacgctcaacaagcttgagcagaacccctatttcgca
cggattgactttcgtgaaggggacgaaaaacgagacgagaccatctatattggcatggca
tcgtttaccgaccggcctgaccactacctgatctatgactggcgggcaccgatttctagc
atttactataacggtggaatcggcaatgtcagttacatgacgcccgacggtgaacagacc
gttgatgtcaaattaaagcgccaattccaaattgaaaattcgaagatcaagacggtgttt
gataccgaagaagtcgtgggtgaccagatgcttctggatgccttgagcaatcgttcagac
accaagatgaagagtatcgtgaccaccattcaaaaagaacagaaccagattattcgggat
accgattctgatttactgtttgtccaaggctcagctggttccggaaagacggccgccgtt
ctgcagcgggtggcctttctcctgtaccaataccgcgggaatctccattccggccaaatt
attttattttcaccaaaccaactgtttaatgactatattaaccaggtgctccctgaactg
ggcgagcagaacatggttcagatgacgttctatcagtacagctcacaccgtttgccgagt
gttcaagttgagaccctgtctgagcgcttcactgagcaactggacaagactgcccagaag
ctgactgacgtcaaaggcagcttggattatttccgagcagtcagtgcttacgccaaccat
ttgaacaaggaagacatgcgctttagaaacctgatgtttaacggcgaaatcctgattcca
aaagaaaaaatcgccgaaatctattatggtttcaatgagaactacaacctccgcaaccga
ctggagtcaaccaaggaagaattgatgaagattcttaaccgcaagattcacgtcgaaatg
cggaaaaagtgggttgaagatgcggttcaaaacctatctaaagaagaaattcaacagttc
catgccgaaggtgaagaagaaattctcaatgccgataaggaattcaagttcctggcccga
cggattgttatcaagtcatttcgaaaagtccagcggcaaatttctcgcaaccactggttg
agtatcaataaccagtttgttcatatgcttaaagagatgccaaagatcctcaatctggct
gattttggcatttctaacgagttgtgggccgaagagatcaaagccaccgtcggccgtttg
aagaagggcagattgtcgttagctgatgcgtcatcgtacatttacttgtatgacttgatg
actggtaaacgcggcgataaagatattcgttatctctttattgatgaggtgcaggattat
tcagcctttcaattggcattcttgaaattcagtttcccaagggcacgattcacgctgctg
ggtgatttgaaccaggcgattttcacccatgaaaacagccgtaaattgttgggcgaactt
ggcagcatgttccccgaggataagacccgcgtggttcaattgaccaagtcgtaccgatca
acagaacagattaccaactttaccaagcacctgttgaccaatggtgagaatatcattcca
ttcaaccgtcaaggcgacctgccgcacatttacgtcaaggacggggtcgatgctgcagtt
gagcaggttaaacagcagtccgagttgaacttggccgaccatgaaacaacggccatcatt
ggcaagacactgaaagaatgtcaagagctaagcggcaaactcgctgaactgggtgtcaag
tcaacattgattcgaactgaaaatcagcgtttggtgaagggcatcattgtcgtgccttca
taccttgccaaagggttggaattcgacagtgtgattatgtgggatgcttcgacggcctgc
tacccggacgagagtgatcgccaactggtctacacgatttgtacccgggcaatgcatcga
ttgacggttgtggcagtcaaatcgttgtcaccaatttttgagacggtgcctcaagatgaa
tatgaattgaattaa
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integrated database retrieval system
