Lentilactobacillus buchneri subsp. silagei CD034: LBUCD034_2001
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Entry
LBUCD034_2001 CDS
T02244
Symbol
recq3
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lbn
Lentilactobacillus buchneri subsp. silagei CD034
Pathway
lbn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lbn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LBUCD034_2001 (recq3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbn03019
]
LBUCD034_2001 (recq3)
03400 DNA repair and recombination proteins [BR:
lbn03400
]
LBUCD034_2001 (recq3)
Enzymes [BR:
lbn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LBUCD034_2001 (recq3)
Messenger RNA biogenesis [BR:
lbn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LBUCD034_2001 (recq3)
DNA repair and recombination proteins [BR:
lbn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LBUCD034_2001 (recq3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
AFS00990
UniProt:
J9W813
LinkDB
All DBs
Position
complement(1988020..1989798)
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AA seq
592 aa
AA seq
DB search
MTPEKLLKTKFGYDSFRPGQQTVIDDILAHQNVLTIMPTGGGKSLCYQIPAMLEDGLTLV
VSPLIALMKDQVDALNETGIPATFINSSLDFDEIDERFQQARDGEVKLLYVSPERLDSGA
FNRLASLPIDLVAVDEAHCISQWGHDFRPSYLALTERLHDLPTKPTIVALTATATPQVAD
DIKQRLHIKEEVKTGFARDNLAFKVIQNQDSDKYMLDYLKLNAAESGIIYASTRKEVERV
TKLLSKHKFSVTMYHGGMTKEQRRKNQDDFLYDRALVMVATNAFGMGIDKSNVRFVIHDS
VPGSLEEYYQEAGRAGRDGLPSEAILLFKLKDVQTQHFFIDQSERDEQSKHQAYKKLQIM
TQYANTQQCLQQFILNYFGEKDGQPCGRCSNCLDTRESQDITVDTQKVLSCVLRMKERFG
KSLVAQVLTGSKVQKVKAFHFNQLSTYGIMKGDSQKNVVSLIDYLTAGGYLMASGGQFPV
LKVTAKGAAVLQGETKVTRKISVKATKSVAENDDLFESLRQLRRELAEKQGVPPFVIFSD
KTLHEMSAVMPTTDSQMLDVKGVGESKLEKYGEQFMDVILNYQAEPKVGTEV
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
ttgacgcccgaaaaactattaaaaactaaatttggctatgacagctttcgtcctggacag
cagaccgtcattgacgatattttggcccatcaaaacgtgttgaccatcatgccgaccggc
ggcgggaaatcgctgtgttatcagattccggcaatgttagaagatggcctgaccctcgtg
gtttcgccgctgattgctttgatgaaggaccaagtagacgccctgaacgaaacgggcatt
cccgccacgttcatcaacagtagcctggattttgacgaaattgacgagcgctttcagcag
gcccgagacggtgaggttaagctgctgtatgtttctcctgaacgcttggattccggggcg
tttaaccgtttggccagcctgccgattgatctggtagcggttgatgaagcccactgtatt
tctcaatgggggcacgactttcggccaagttatttggcattgaccgaacggcttcatgac
ttgccgactaagccgacgatcgttgcgctgacagccactgcaacaccgcaagttgccgac
gacattaagcagcgtctgcatataaaagaagaagtcaagaccggttttgcccgggataat
ttggcttttaaagtgattcagaaccaagacagcgacaaatatatgctggattatttgaaa
ttaaacgccgctgaatccggcatcatctatgccagcaccagaaaagaagttgagcgggtc
acgaagcttttgtccaagcacaaattctcggtgaccatgtatcacggcggcatgaccaag
gagcaacgccgaaaaaatcaggacgattttctttatgaccgcgccttggtgatggtcgct
accaatgcctttggaatggggattgacaaaagcaacgttcgtttcgtaattcatgattcg
gttcctggtagtttggaagaatattaccaggaagctggtcgggctggtcgagacggattg
cccagtgaagcgattttactgttcaaattaaaagacgttcagactcagcacttcttcatt
gatcagtctgaacgtgacgagcaaagtaagcatcaagcctacaaaaagcttcagattatg
actcagtatgccaatactcagcaatgtctgcagcagtttattttgaattattttggtgag
aaggacggccaaccctgtggtcgctgcagcaactgtctggatacccgcgaatcccaagat
attaccgtggacacccagaaggttttatcgtgtgttctgcggatgaaggaacggttcggc
aaaagtttggtggctcaagtactgactggctccaaagtgcaaaaggtgaaagcttttcat
ttcaatcagctctccacatacggcattatgaagggtgactcacagaaaaatgtggtttca
ttaatcgattacctgacagctggaggttacctaatggcgtccggtggccaattccccgtg
ttaaaggtgactgccaaaggtgccgccgtgctccaaggtgagacgaaggtcactcgaaag
atctcggttaaggccactaaaagtgttgccgaaaatgatgatttatttgaatccttgaga
caactccgccgtgaattggctgagaagcagggtgtaccaccatttgtcatcttctctgat
aagacgcttcatgaaatgagtgccgtgatgccgacgactgactcacagatgctggatgtt
aagggtgttggtgagagcaagctggaaaaatacggtgagcagtttatggacgtgattttg
aattatcaagctgaaccgaaagttgggaccgaagtttga
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