Leptolyngbya boryana: LBWT_15520
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Entry
LBWT_15520 CDS
T04848
Name
(GenBank) exoribonuclease R
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
lbo
Leptolyngbya boryana
Brite
KEGG Orthology (KO) [BR:
lbo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lbo03016
]
LBWT_15520
Enzymes [BR:
lbo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LBWT_15520
Transfer RNA biogenesis [BR:
lbo03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
LBWT_15520
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Gene cluster
GFIT
Motif
Pfam:
RNB
HTH_RNase_II
WHD_RNase_II
CSD_RNase_II
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
BAS55648
LinkDB
All DBs
Position
1649113..1651134
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AA seq
673 aa
AA seq
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MEKGTLVEFRVNGERRLAVAERPEGKKHWIVIDDRSQNHTLHPRQITYEVANQSFKPTDI
PSFLKETQPYLDPSSLEVAWEILIETGDSTNPEEMAILLFSDKSAAMCYAAHYLLSEDKL
YFKQKGDRYEPRSANQVAELKHQIEMEAQRQREWQSFLERVRFALDGETVEWQASDRPRL
DALERFAVSEETPNRASALELMSALKRPETSPAAFQLLVDLRIWSPHENLFLRRAQVPMQ
FSQKVLEVAHHRLESPPEDLDVNRLDLTHLKVYTIDDESTKEIDDGLSLEVLPDGRERIW
IHIADPTRWVVPGDELDLDARKRITTIYLPTGMIPMFPSELATGPMSLNPGVICCALSFA
VTLTAEGAIEDYSIHASSIRSTYRLTYDDVDEMLHLNVQGEPEIEGLAKWAKQRTAWRQT
QGAISIHMPESSIKVKNDGEVTIEVLDDSMSRQLVAEMMILAGEVAARYAQTHSLPLPFR
GQPQPELPSDEELLQLPAGPVRSCAIRRCMPRSELTITPARHASLGLDTYTQVTSPIRRY
SDLLAHFQIKAHLRGDVLPFSEEEVKELMINIGLAVQEAVFVERHTNRYWSLEYLRRHSD
EVWDALMLRWLREHEGLGLVLLEELGLELPMVFQQRSIRPGDQLRLKVSLVDPRRDEIRF
QEVTSQEAQQVAG
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atggagaagggaaccttagtcgaatttcgcgtcaatggtgagcgtcgtctcgctgttgcc
gagcgtccagaaggcaaaaagcactggatcgtaattgacgatcgttctcagaatcatacg
cttcacccgcgacaaatcacctacgaagtcgccaaccaaagttttaaaccgacggatatc
cctagttttctcaaagagacgcagccttatctcgacccttcaagcctagaggttgcttgg
gaaattcttatcgaaaccggagacagcactaaccctgaggaaatggcaatactgctgttt
tccgacaaaagtgcagcgatgtgttacgctgctcactacttactttcagaagataagctt
tactttaagcagaagggcgatcgctatgagccacgttctgcgaatcaagtggcagaatta
aagcatcagatcgagatggaagctcaacgccaacgcgaatggcagagtttcttagagcga
gtccgattcgccttggacggggaaacggtcgaatggcaagccagcgatcgacctcgttta
gatgcgttagagcgatttgcagtcagcgaagaaactcccaatcgggctagcgcactcgaa
ctgatgtctgctctgaagcgtcctgaaacctctcccgccgcctttcaacttctcgttgac
ctgagaatttggagtcctcacgagaacttgtttctacggcgcgcacaggttccgatgcaa
ttttctcagaaggttttggaagtggcgcaccaccgtttggaatccccacctgaagattta
gatgtcaatcgtcttgatttgacacacttaaaggtttatacgatcgacgatgaaagcaca
aaagagatcgacgatggtttaagtctagaagtgttacctgatgggcgagagcgcatttgg
attcatattgctgacccgactcggtgggtagtgccgggggatgagttagacctcgatgcg
cgcaagcggattacaacgatttatttgccaacgggcatgattccgatgtttccgtcggag
ttggcgacgggtccgatgagcttgaatccgggtgtcatttgctgtgcgttgagttttgca
gtgaccctgaccgcagagggtgcgatcgaagactacagtattcatgcgagttcgattcga
tcgacgtatcgtctgacctatgatgatgtcgatgaaatgctgcatttaaacgtgcagggc
gaaccggaaatcgaaggattagccaagtgggcaaagcagcgcacagcatggcggcagact
caaggcgcgattagtattcacatgccggagtcttcgatcaaagtcaaaaatgatggagaa
gtgacgatcgaggtgctagacgattcgatgtctcggcaattggtcgctgaaatgatgatt
ttggcgggtgaagtggcggcgcgctatgctcagactcacagtttgcccttaccgtttcgg
ggacagcctcaaccagagcttccttcagatgaggaattattgcagcttccagcgggacct
gtgcgatcgtgtgcgattcggcgctgtatgcctcggagcgaattgacgattacgcctgcg
cgtcatgcgagtttgggattagatacgtatacacaagtcacttctcccattcgccgttat
agcgatttactcgcgcattttcagatcaaggcgcatttgcggggcgatgtactgcccttc
tctgaagaagaagtcaaagaattgatgatcaatattggcttagccgttcaagaagcagtc
tttgtggagcgacataccaatcgctactggagtttggagtatctccgccgacattcagat
gaggtttgggatgctctgatgctgcgctggttgcgagagcatgaaggcttaggattagtg
ttgctagaagagctaggtttagaattaccaatggtgtttcaacaacgatcgattcgccct
ggtgatcagttgcgcttgaaagtcagcttagttgatccacgccgggatgaaatccgattc
caagaagtaacctcacaagaagctcagcaggttgcaggttaa
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