Leptolyngbya boryana: LBWT_33100
Help
Entry
LBWT_33100 CDS
T04848
Name
(GenBank) RNA-metabolising metallo-beta-lactamase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lbo
Leptolyngbya boryana
Pathway
lbo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lbo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LBWT_33100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbo03019
]
LBWT_33100
Messenger RNA biogenesis [BR:
lbo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LBWT_33100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
RNase_J_C
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
BAS57355
LinkDB
All DBs
Position
complement(3521580..3523340)
Genome browser
AA seq
586 aa
AA seq
DB search
MTQNNSSNALKIIPLGGLHEIGKNTCVFEYGDEIVLLDAGLAFPTDGMHGVNIVLPDMTY
LRENREKIKGMIITHGHEDHIGGIAFHLKQLDIPVMYGPRLALALLEGKLEEAGVADRTE
LRTVRPRDIIRIGSHFFVEFIRNTHSIADSFTVAIHTPVGVVIHTGDFKFDHTPVDGEKF
DIQRLAEYGEKGVQCLISDSTNSEIPGFTPSERAVFPNLDRVFTQAQGRLLITTFASSVH
RINMILELAEKHGRVVSVLGRSMLNVIAHARTLGYIKCRDDILQPLHVTQKMPDKDVLIL
TTGSQGEPMSAMTRIANGEHRQVKIREGDTVVFSANPIPGNTIAVVNTIDKLMMNGAKVV
YGKDQGIHVSGHGCQEDQKLMLALTRPKFFLPVHGEHRMLIKHSQTAQSTGIPAENMVII
DNGDVVELTKDSIRKAGKVKAGIELVDTSRSGMVDDRVLKERQQLAGDGVVTVAAAVTNE
GRLFSKPDVHLRGVVTSVNPEQLRTRIQDAIEAVLSDRWKEFYSTFEGRIEIDWAGLEVQ
IEREIHRLLRRELQSNPLLVFLMQTPDAPVVKSTPGRTRSTARVAS
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atgactcaaaataactcttcaaacgcgctcaaaatcatcccgcttggcggattacatgaa
attggtaaaaatacctgcgtttttgaatacggcgatgagattgtgcttctcgacgctgga
cttgcttttccgaccgatgggatgcacggtgtgaatattgtgctgccggacatgacctat
ttgcgggaaaatcgcgaaaagatcaagggtatgattattacccacggtcatgaagatcat
atcggtggcattgctttccacttgaagcagctagatattccagtgatgtatggacctcgt
ttggctctggcattgctcgaaggcaaactcgaagaagctggcgttgccgaccgcacagaa
ctcagaacggttcgcccacgcgacattatccgcattggttctcatttctttgtcgagttc
attcggaatactcactcgatcgcggatagtttcaccgttgcgattcatacgcctgtcggg
gttgtgattcacacaggcgatttcaaattcgatcacactccagttgatggcgagaagttc
gacattcagcgcttagcggagtacggcgaaaaaggtgtgcaatgtttgatcagcgattca
acgaactctgagattccaggttttactccttcggaacgtgctgtattcccgaatctcgat
cgagtgtttacacaagctcaaggtcgcttactgatcacgacgtttgcttcttctgtgcac
cggatcaacatgattttggaactggcagaaaagcatggtcgtgtggtttcggtcttaggt
cgatcgatgctgaatgtgatcgctcacgcgcgaactttgggatatatcaaatgccgcgat
gatattcttcagccgttgcatgtgacacaaaagatgcccgataaagatgtcctgattttg
acgactggatcgcaaggtgaaccgatgtcagcgatgactcgaattgccaatggagaacat
cgccaggtcaagatccgggaaggtgataccgttgttttctcagcgaatccgattccagga
aatacgatcgcggttgtcaacacgatcgacaagctgatgatgaatggcgcgaaggtcgtt
tatggaaaagaccaaggcattcacgtttcaggtcacggttgccaagaagatcagaaattg
atgctggctctgactcgtccgaagttcttcttacccgttcacggtgagcatcggatgtta
atcaaacattctcaaacggctcaaagcacgggcattccggctgagaatatggtgattatc
gacaatggtgatgttgttgaattgaccaaagattcgatccgcaaggctggcaaagtgaaa
gctggaattgagttagtcgatacttcgcgatcgggcatggtggacgatcgcgttctgaaa
gagcgtcagcagttagcgggtgatggtgttgtaaccgttgctgcggctgtgacgaatgaa
gggcgcttgttcagtaagcccgatgtgcatttgcgtggggttgtaacttcggtgaatcca
gagcaattgagaacgagaattcaagacgcgatcgaggcggtgttaagcgatcgctggaag
gagttttacagcacgtttgagggtcgcattgagatcgactgggctggtttagaagttcag
atcgagcgtgagattcatcgcttgctgcgtcgtgagttgcaaagcaatccgttgttagtg
ttcttgatgcaaactccggatgcgcctgtggtgaaatcgactccaggaagaacgcgatcg
actgcaagagtcgcgtcttaa
DBGET
integrated database retrieval system
