Leptolyngbya boryana: LBWT_47230
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Entry
LBWT_47230 CDS
T04848
Name
(GenBank) DNA/RNA helicase, superfamily II
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lbo
Leptolyngbya boryana
Pathway
lbo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lbo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LBWT_47230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbo03019
]
LBWT_47230
03009 Ribosome biogenesis [BR:
lbo03009
]
LBWT_47230
Enzymes [BR:
lbo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LBWT_47230
Messenger RNA biogenesis [BR:
lbo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LBWT_47230
Ribosome biogenesis [BR:
lbo03009
]
Prokaryotic type
rRNA helicases
LBWT_47230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Helicase_RecD
HEM4
AAA_30
Motif
Other DBs
NCBI-ProteinID:
BAS58756
LinkDB
All DBs
Position
complement(4965338..4966786)
Genome browser
AA seq
482 aa
AA seq
DB search
MTLSFHSLGLSEDRIRHLEELGFTAPTAIQAQAIPHLLAGRDVVGQAQTGTGKTAAFGLP
ILERIDTKSPTVQALILTPTRELAMQVCQAIRTFTDDRRVKVVTIYGGQSIDLQVDRLRR
GAQIVVGTPGRVIDLLGRGDLRLDNLSWLVLDEADEMLNMGFIQDVEKILNQAPVERQTT
FFSATMEPSIRKLVTKFLRSPVTVTIEQPKAAPSRINQVAYTIPRGWTKARAILPILELE
DPEAAIIFVRTRRAAAELTSQLQAAGHSVDEYHGDLSQSQRERLLLRFRQQQIKWVVATD
IAARGIHVDNLTHVINYDLPDSVESYVHRIGRTGRAGKEGTAISLVHPLDRRKLRDIENH
VRQRLEIKPVPTRAEIEARYLDKLQAQVRETLAGERVASFLPIVSQLAEDYEPHTIAAAA
LQMIYDRTRPAWITIGTDPTPEEEASSRGGAKQKPVKRSRPSGGHSASGSSGQRRHPAAR
SK
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgaccctttcttttcatagcctcggactgtctgaagaccggattcgccatctcgaagaa
ctcggatttactgctccgactgccatccaagcccaagccattcctcatttactcgctggg
cgtgatgtcgtcggtcaagcacaaaccggaactgggaaaactgcggcgttcgggcttccg
attctggagcggattgatacaaaatcccccacagtccaagcgctgattctgactccgact
cgcgaattggcgatgcaagtttgccaagcgattcgtacgttcactgacgatcgtcgagtt
aaagtcgtcacgatctacggcggacaatcgatcgatctacaagttgatcgcttacgtcgt
ggcgctcaaattgtcgtcggaactcccggtcgagtgattgatttgctcggtcgtggtgat
ctaagactcgataatctcagctggctcgttctcgacgaagcagatgagatgctgaacatg
ggctttattcaggatgttgagaagatcttgaatcaagcgcctgttgaacgtcaaacgacg
ttcttctcggcaacgatggaaccttcgatccgtaagttggtcaccaagttcttgcgctct
ccggtgacggtgacgatcgaacaacccaaagccgctccttctcgcattaatcaagttgct
tacacgattcctcgcggatggacaaaagctcgggcaattctaccgattctcgaattggaa
gatcccgaagccgcaattatcttcgtgagaactcgtcgggcagccgcagaattgaccagc
caattacaagccgctggacatagtgtggatgaataccacggtgatttgagccaaagccaa
cgtgaacggctattgctccggttccgccagcagcagatcaaatgggtggtcgcgaccgac
atcgcggcacgaggaatccatgtggataacttgacccatgtgatcaactacgacttgccg
gatagcgttgaaagctatgtgcaccggattggtcggacaggtcgtgcgggtaaagaaggc
acggcaatttcgctggtgcatccgctggatcgtcgcaaactgcgcgatatcgaaaatcac
gttcgccaacgcttagagattaagccagttccgactcgtgcggaaattgaagctcgctac
ttagataagctgcaagctcaagtgcgcgagacgctagcaggagagcgagtcgcatcgttc
ttgccgattgtgtctcagttggccgaagattacgaaccgcatacgatcgcggctgcggca
ttgcagatgatctacgatcgcactcgtcccgcttggattaccatcgggactgatccgact
cctgaagaagaagcttcttcgagaggcggtgcgaagcagaagcctgtgaagcgttctaga
ccttctggaggacattctgcttcaggtagttctggtcagcgtcgtcatcctgcggcacga
tcgaagtaa
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