Lachnospiraceae bacterium JLR.KK008: V1224_00700
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Entry
V1224_00700 CDS
T10585
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lbp Lachnospiraceae bacterium JLR.KK008
Pathway
lbp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lbp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
V1224_00700 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lbp03400
]
V1224_00700 (mfd)
Enzymes [BR:
lbp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
V1224_00700 (mfd)
DNA repair and recombination proteins [BR:
lbp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
V1224_00700 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
WWR16007
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All DBs
Position
133700..137257
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AA seq
1185 aa
AA seq
DB search
MSVRTLKKPFEEMGEFPEIQKLLQKAGKTISVNGCVDSQKIHMAYGLGEGFRNKLVVTYS
DLRAREIYEDYTFYDRNAVVYPAKDLIFYQADVHGNRLTMERMKVLRRILEGAPVTVITT
FDSLMAYQVPIETLKTGIVRIQKGRELPEKELSALLVAAGYEKVYQVEAQGQFAIRGGII
DIFDLTEENPYRIELWGDEVDSVRSFDIRSQRSIENLESVSVYPATEIVLSDDSIERGVA
AIEKEGAETEARLRRQMQTEEAHRIKGQVAELREQMLESRSLVNLESYIRYFYEQPVSFL
DFFQEDNTLLILDEPARLKEHGDAVELEFRESMMHRAQKGYVLPGQMDLLLSVEQTTARL
KKYHVAMLSSIHQKDTLLPCDSRFAVTAKSIASYNNSFEMLVSDLRRYKKNGYRVLLLSG
SRTRARRLASDLADHDLAAFYSEDPERELAEGEIMTCFGHVLRGFEYPLLKYVILSESDI
FGGEKKKKKKKQRKYEGQKIHDFTELKVGDYVVHESHGLGIYRGIEKVEIEKVVKDYMKI
EYRDGGNLYILATGFDVIQKYASADAKKPKLNKLGTQEWSRTRSKVKSAVGEVAKDLVDL
YAARQQKSGFCFDRDTVWQREFEESFPFEETEDQLTAIEATKADMESNKIMDRLVCGDVG
YGKTEIAIRAAFKAVQSGKQTVFLVPTTILAQQHYNTFMQRMKDFPVRVDLMSRFRTPAQ
QKQTIEDLKKGLVDIVIGTHRVLSADVGFKDLGLLIIDEEQRFGVTHKEKIKTMKENVDV
LTLTATPIPRTLHMSLAGIRDMSVLEEAPGERVPIQTYVMEYNDEMVREAIVRELSRGGQ
VYYVYNRVNTIADTAAAISRLVPEATVGFAHGQMKERELERIMYDFIDGEIDVLVSTTII
ETGLDISNVNTMIIHDSDNMGLSQLYQLRGRVGRSNRTAYAFLMYKKDKLLKEVAEKRLQ
AIREFTDLGSGFKIAMRDLEIRGAGNLLGRRQHGHMEAVGYDLYCKMLNEAVKHLKGEEE
KVDFSTTVDLDVDAYIPPSYIMNEVQKLDIYKRIASIEDQAECEDMREELVDRFGESPKS
VENLLRIALIRKQAHTLYLSDVQGKNELLTFKFIQNAPVRIENLPQILEHYQGKMTFCPK
GDPYLQYRYKKCGLVEKDGEMLLKLTEDLLEQMRGFLLAGKEDEK
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtgaggacactgaaaaaaccctttgaggaaatgggggaatttccggaaatacag
aaattattacagaaagcaggaaagacgatcagcgtcaatggctgcgtggattctcagaag
atccatatggcctatggactcggtgaggggtttcgaaataaactggttgtcacctacagt
gacttgagagccagagaaatttacgaggattataccttttatgacagaaatgcagttgtc
tatccggcgaaagatctgattttctatcaggccgatgtgcatggaaacaggctgacaatg
gagcggatgaaagtgctgcgcaggattttggaaggagctcctgtcacagtgatcacgaca
tttgacagtctgatggcttatcaggtgccgatcgaaactttgaaaacagggattgtgcgt
atccagaaaggacgggagctgcctgaaaaagagctgtcagcattgcttgtggctgccggt
tatgaaaaggtttatcaggtggaggcacagggacagtttgcgatccgaggcggaattatc
gatatttttgatctgacagaggaaaacccgtatcgaattgaactgtggggagatgaagtg
gattctgtgcgcagtttcgatattcgcagtcagcggtcaatagaaaatctggagagtgtg
tccgtctatccggcgacagagatcgtactgtctgatgacagtatagagcggggagttgct
gcgattgagaaggaaggggcagaaactgaggcaagacttcggagacagatgcagacggaa
gaggcacaccgcatcaaagggcaggtcgcagaattaagagaacagatgctcgaatctcgt
tcgctggtaaatctggagagttatattcggtatttttatgagcaacccgtttcatttctt
gacttttttcaggaagacaatacgctgctcattctggatgagcctgccagactgaaagaa
catggagatgcagtagaactggaatttcgggagagtatgatgcaccgtgcgcaaaaaggc
tacgtattgccggggcagatggatctgctgctctccgtagaacagacaactgccagactg
aaaaaatatcatgtggcaatgctctcgtctattcatcagaaagatacactgcttccctgc
gacagcagatttgcggtgacggcgaagtcaatcgcttcttacaataatagttttgagatg
ctggtcagtgacctgcggcgttacaaaaaaaacggttaccgggtacttttattgtccggt
tcccggacacgggcaaggcggcttgcaagcgacctggcggatcatgacctggcggcattt
tacagtgaagacccggaaagagagttggcggaaggggagatcatgacttgctttgggcat
gtgctcagagggtttgagtaccctctgttaaagtatgtcattttatctgagagtgatatt
ttcgggggagagaaaaagaaaaaaaagaaaaagcagcgtaagtatgaaggacagaagatt
catgattttacagaactgaaagtcggcgattacgttgttcatgagagccatggtctcggc
atctatcggggaattgaaaaggttgaaatagaaaaagtcgtcaaagattatatgaaaatc
gaatatcgggacggagggaatctttatattttagccactggctttgatgtcatacaaaag
tatgccagcgcagatgccaaaaagccgaaactgaacaagctgggcacgcaggaatggagc
cgcacgagaagtaaagtaaaaagtgcggtgggggaagtcgccaaagatcttgtcgatctg
tatgcagccagacagcaaaagagtggattctgttttgacagggatactgtgtggcagaga
gaatttgaggaatcctttcccttcgaagaaacggaagaccagctcacagccattgaagcg
acgaaggcggatatggagagcaacaagatcatggaccgtcttgtctgcggcgatgtcgga
tacggcaagacggagattgcaatccgggcggcgtttaaggcggtgcaaagcgggaagcag
acggtatttcttgtgccaacgacgatcctggcgcagcagcattacaatacgtttatgcag
agaatgaaagattttcctgtgagggtcgatctgatgtcgagatttcgcacaccggcgcag
cagaaacagacgatcgaagacctgaaaaaggggcttgtagatattgtgatcggaacccac
agagtgctgtccgccgatgttggatttaaggacctgggactgctcatcatcgatgaggag
cagcgctttggcgtgacacataaagaaaaaatcaagacaatgaaggaaaatgtcgatgta
ctgacactgacagcaacaccgataccacgaacgcttcatatgagcctggcgggaatccgg
gacatgagcgtactggaggaggctccgggggagcgggtgccgatccagacttatgtgatg
gaatataatgatgagatggtgagggaagccattgtcagagagctttcaaggggtggacaa
gtatattacgtatataacagagtcaatacgatagcagataccgcagctgccatcagccgt
cttgtgccggaggcgacggtgggatttgcgcacggccagatgaaggaacgggagctggaa
cggatcatgtatgatttcatagacggagaaatcgatgtccttgtctccacaacgattatc
gagaccgggcttgacatttccaatgtgaacacgatgattatacatgactcagataacatg
ggcttgtcgcagctgtatcagcttcggggaagagtaggccgctctaacagaactgcctat
gcgtttttgatgtacaaaaaggataaattgctgaaggaagtggcggaaaagagacttcag
gcaatccgggagtttacggatctggggagcggttttaaaattgccatgcgcgatctggaa
atacggggcgccggcaatcttctcggcaggcgtcagcatgggcatatggaggcggtcggc
tatgacttatattgcaaaatgctcaacgaggcagtgaaacatttaaagggagaagaggaa
aaggttgatttttccacgacggtcgatctggatgtggacgcttatattccgccctcctat
attatgaatgaagtacagaaactggatatttataaaagaattgcaagtatcgaggatcag
gcggaatgtgaggacatgagggaggaactggtagacagattcggggaaagtccgaaatca
gtggaaaatctgctgcgtattgcgctgattcgcaagcaggctcatactctgtatctgtct
gacgtacagggaaaaaatgaactgttaacgtttaaatttattcagaacgcacctgtgagg
attgaaaacctgcctcaaatattggagcattatcaaggaaaaatgacgttttgccccaaa
ggagatccatatttgcagtatcgttataaaaaatgtggtttggtagagaaggatggggaa
atgcttttgaaactgactgaagacttgctggagcagatgcgaggctttctgctggcaggg
aaggaagacgaaaaatag
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