Lachnospiraceae bacterium JLR.KK008: V1224_02470
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Entry
V1224_02470 CDS
T10585
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lbp Lachnospiraceae bacterium JLR.KK008
Pathway
lbp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lbp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
V1224_02470 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lbp03021
]
V1224_02470 (rpoC)
03400 DNA repair and recombination proteins [BR:
lbp03400
]
V1224_02470 (rpoC)
Enzymes [BR:
lbp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
V1224_02470 (rpoC)
Transcription machinery [BR:
lbp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
V1224_02470 (rpoC)
DNA repair and recombination proteins [BR:
lbp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
V1224_02470 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
WWR16341
LinkDB
All DBs
Position
496050..499835
Genome browser
AA seq
1261 aa
AA seq
DB search
MPETTNETYQPMTFDAIKIGLASPDKILEWSRGEVLKPETINYRTLKPEKDGLYCERIFG
PSKDWECHCGKYKKIRYKGVICDRCGVEVTKSNVRRERMGHIALAAPVSHIWYFKGIPSR
MGLILDLSPRVLEKVLYFASYIVLDQGDTDLLRKQVLTEKEYQDARETWGNKFRVGMGAE
AIKELLQAIDLEEDATELKEALKDSTGQKRARIVKRLEVVEAFRESGNRPEWMIMDVIPV
IPPDLRPMVQLDGGRFATSDLNDLYRRIINRNNRLKRLLELGAPDIIVRNEKRMLQEAVD
ALIDNGRRGRPVTGPGNRALKSLSDMLKGKSGRFRQNLLGKRVDYSGRSVIVVGPELKIY
QCGLPKEMAIELFKPFVMKELVAKGISQNIKNAKKLVERLDTQVWDVLEEVIKEHPVMLN
RAPTLHRLGIQAFEPILVEGKAIKLHPLVCTAFNADFDGDQMAVHLPLSVEAQAECRFLL
LSPNNLLKPSDGGPVAVPSQDMVLGIYYLTQERPGAKGEGKFFKSVNEAILAYENKVITL
HSRIKVRVSKKNADGEKISDNVESTLGRFIFNEILPQDLGFVDRSDPENFLKLEVDFHVG
KKGLKQILEKVINTHGASRTAEVLDDIKSTGYKYSTRAAMTVSISDMTVPEQKQQMLEDA
QLTVDRISQNFRRGLITEEERYRAVVETWNETDKELTDVLLAGLDKYNNIFMMADSGARG
SNQQIKQLAGMRGLMADTTGRTIELPIKSNFREGLDVLEYFMSAHGARKGLSDTALRTAD
SGYLTRRMVDVSQELIIREVDCCEGREEIPGMTVKAFMDGKETIEGLKDRITGRFSCEEI
KDRDGNVIVKKNHMITPSRAARILNTGVDADGEPVEAVKIRTILGCRSHNGICAKCYGAN
MATGEPVQVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRVEELFEARKPK
GLAIIAEFGGVAEIRDTKKKREIVITNDETGESKTYLIPYGSRIKIMDGAVLEAGDELTE
GSVNPHDLLKIKGIRAVQDYMLREVQRVYRLQGVDISDKHIEVIVRQMLKKTRIEDSGDT
EFLPGTLVDVLDYEEINEKLFAEGKEPAVGKQVMLGITKAALATNSFLSAASFQETTKVL
TEAAIKGKVDNLIGLKENIIIGKLIPAGTGMKRYRNVKLSTDTEPDDTIYFEDDLEEDDL
DVRDGFTDEPEMEEDLDLDDDIDLEEDDFDDEESETEAFDDDLDEQDETAEADMAGVIEE
V
NT seq
3786 nt
NT seq
+upstream
nt +downstream
nt
atgccagaaacaacaaatgaaacctatcagccgatgacattcgatgcgatcaagatcgga
ttggcgtcgcccgataaaattctcgagtggtcccggggggaagtgctcaaaccggagacg
atcaactacaggactttgaagccggaaaaggacggtctctactgtgagagaatttttggg
ccgagcaaagactgggaatgtcattgtggtaaatataagaaaatcagatataagggcgtg
atctgcgaccgctgtggtgtggaagtgacaaagtctaatgtgcgccgggagcgaatggga
catattgcgctggcggctccggtatcccacatctggtatttcaagggaattcccagccgc
atgggtctgattctcgatctgtcaccgagagtattggagaaggtgctctatttcgcctct
tatatcgtactcgaccagggagataccgatctgctgagaaagcaggtcttgacggaaaaa
gagtatcaggatgcccgggagacgtggggcaataaattccgcgtaggtatgggagcggaa
gcaatcaaggaactgctgcaggcaatcgatctggaagaggatgccacagaactgaaagag
gcgctgaaagattcgaccggacagaaacgtgccaggatcgtcaagagactggaagtcgtg
gaggcattccgtgaatccggcaacagaccggagtggatgattatggatgtgatcccggtc
attccgccggacttgcgtccgatggtacagcttgacggcgggcgttttgcgacatccgat
ctgaacgacctgtatcgaagaatcatcaacagaaacaaccgtctgaagaggctgttggag
ctgggtgcacctgacattattgtcagaaatgagaagagaatgctgcaggaggcagtggat
gcgctgattgacaatggcagaagaggcagacctgtcaccggcccgggaaacagagcgctg
aaatcgctttctgatatgttgaaaggtaaatcaggacgtttccgtcagaaccttctcgga
aaacgtgtggactattcggggcgttctgttattgtcgtaggaccggaactgaagatctat
cagtgcggtctgccgaaagagatggccattgagctgttcaaacctttcgttatgaaagag
ctggtagccaagggaatctcgcagaatattaaaaatgccaaaaagctggtcgagagactg
gacactcaggtgtgggacgtactggaggaagtgatcaaagaacaccctgtcatgctgaac
cgtgcacctacactgcacaggctgggcattcaggcgttcgaaccgattctggtggaaggc
aaggcgatcaagctgcatccccttgtatgtaccgcgttcaatgccgactttgacggtgac
cagatggcagtccatctgccgctttccgtggaagcgcaggcagagtgccgtttccttctg
ctttcgcccaataatctgttaaaaccgtcggacggcggtccggttgcggtgccttctcag
gatatggtgcttggtatttattatctgacgcaggagaggccgggtgcaaaaggggaaggc
aaattcttcaagagtgtaaacgaggcgatcctcgcctatgagaataaagtaatcacgttg
cattcgcggatcaaagtcagagtgagcaagaagaatgcagacggcgagaagatcagcgat
aatgtggaatccacgcttggccggtttatctttaatgagatcttgccacaggatttgggg
tttgtagaccgcagcgatccggaaaatttcctgaagctggaagtcgatttccatgtgggt
aaaaaaggcctgaaacagattctggaaaaggtcattaatacgcatggtgcgtcgcggaca
gcggaagtgctggatgacatcaaatccacagggtataaatattccacgagagcggccatg
accgtgtccatttccgatatgacggttccggagcagaaacagcagatgctggaagatgcc
cagttgacggttgaccggatctcgcagaatttccggcgtggtctgatcacggaggaagag
agataccgggccgttgtagagacgtggaacgagaccgataaagaactgacagacgtgctg
cttgcaggtctggataaatataataacattttcatgatggctgattccggcgcccgtggt
tccaatcagcagatcaagcagctcgctggtatgcgtgggttgatggcagatacgaccgga
aggacgatcgaacttccgatcaagtcgaacttccgtgagggtcttgacgtactggaatac
ttcatgtcggcacatggcgcccgcaaaggtttgtctgatacggcgctgcgtacggcggac
tccggctacctgacaagacgtatggtggacgtatctcaggagctgatcatccgcgaggtt
gactgctgtgaaggcagagaagagattccggggatgacggtaaaagctttcatggatggg
aaagagacgatcgaagggctgaaggacagaatcacgggcagattttcctgtgaggagatc
aaagacagggacggtaatgtgatcgttaagaaaaatcatatgattaccccgagccgtgcg
gcccgcattctgaatacaggcgtggacgcagatggtgagccggttgaagcggtaaagatc
cgtacaatactcggatgccgttctcataacgggatctgtgcaaaatgttacggcgccaat
atggcgaccggtgaaccggtgcaggtcggagaggctgtcggcatcattgcggcacagtcg
attggtgagccgggcacacagctgacaatgcgtactttccatacaggcggtgtggcgggt
gacgacatcacgcagggtcttccccgtgtcgaggagctttttgaagccaggaagccgaag
ggactggcaatcatcgcagaatttggcggtgtggctgagatcagagataccaagaaaaaa
agagagatcgtgatcacaaacgatgagacgggagagagtaagacctatctgattccgtat
ggttcccgtatcaagattatggacggcgctgttctggaagccggcgacgagctgacggaa
ggcagtgtcaatccgcatgatctgcttaagatcaaaggcattcgtgccgtacaggattat
atgcttcgcgaggtacagcgtgtatatcgtctgcaaggtgttgacatcagcgacaagcat
atcgaagttatcgtgcgtcagatgttgaaaaagacgcggattgaggacagcggcgatacg
gagttcctgccgggtacgctggtagatgtgcttgactatgaggagatcaatgagaaactg
tttgccgaaggaaaggaaccggcagtcggtaagcaggtgatgcttggaattacgaaagca
gcgcttgccacgaattctttcctgtcagcggcttctttccaggagacgacgaaagtattg
acagaagcagcgatcaagggtaaggtcgataacctgatcggtctgaaggaaaacatcatc
atcggtaagctgattccggccggtacgggcatgaagcgataccgcaacgtaaaactcagt
acggatacagagccggatgatacgatctattttgaagatgatctggaagaagatgatctg
gatgtccgggacggatttaccgatgaaccggaaatggaggaagatcttgatctggatgat
gacatcgatctggaagaggatgatttcgatgatgaggaatcagagaccgaagcgtttgac
gatgacctggatgaacaagatgagactgcggaagcagacatggcaggtgtgattgaagag
gtgtaa
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integrated database retrieval system
