Lachnospiraceae bacterium JLR.KK008: V1224_05440
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Entry
V1224_05440 CDS
T10585
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
lbp Lachnospiraceae bacterium JLR.KK008
Pathway
lbp03420
Nucleotide excision repair
lbp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lbp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
V1224_05440
03430 Mismatch repair
V1224_05440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lbp03400
]
V1224_05440
Enzymes [BR:
lbp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
V1224_05440
DNA repair and recombination proteins [BR:
lbp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
V1224_05440
MMR (mismatch excision repair)
Other MMR factors
V1224_05440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
Viral_helicase1
DUF3553
AAA_11
Plant_all_beta
Motif
Other DBs
NCBI-ProteinID:
WWR16877
LinkDB
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Position
1082137..1084572
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AA seq
811 aa
AA seq
DB search
MSIYDTLNEQQKEAVFHTEGPVLILAGAGSGKTRVLTHRIAYLIDRCSVNPWNIMAITFT
NKAAGEMRERVDNIVGYGAESIWVTTFHSSCVRMLRRYIDRLGYDNNFTIYDTDDQKTVM
KDICKRLEIDTKMLKERTILSAISSAKNECISPTEFELNAAGDFTAQKISKVYGEYQRTL
KKNNALDFDDLLVKAVELFRTCPDVLEYYQDRFRYIMVDEYQDTNTVQFEYIRLLSAKYR
NLCVVGDDDQSIYKFRGANIRNILDFEKVYPEAKVIKLEQNYRSTQNVLDAANQVIRNNI
GRKEKALWTNKGAGNAIHFRQFETAYDEAEYITEDIRRKKREATADYGACAVLFRTNAQA
RLLEERFVVAGIPYDVVGGVNFYARKEIKDLLAYLKTIDNGKDDVAVKRIINIPRRGIGA
ATIARVQSHADERQISFYDALREADQIMAIGKSAAKLQPFVTLIQGFRGKLEYYGLQELL
QDIIDTTGYVKALEESGEEDAENRIENIDELMNKVIAYEDSHEEPSLSGFLEEVALVADI
DNVSDDDNRVLLMTLHSAKGLEFPHVYLAGMEDGVFPSYMTITADDPLEIEEERRLAYVG
ITRAREDLTLTCARARMVRGETQYNMVSRFVREIQEELLDHKPPAVKKRGWEDYSNDTSV
RSHFREKPFGGDFSGFGGDSGGRKSSEGGFGGGRKISAMGSASGLGGGVGVTRPVNDPRL
RPKAIVTPRRTEEENRPFFTKGAASGVSLSKGAPAGERPDYEVSDRVRHVKYGEGTVRNI
EEGVRDYQVTVEFDGAGTKVMYAAFAKLKKV
NT seq
2436 nt
NT seq
+upstream
nt +downstream
nt
atgagtatatacgacactttaaacgaacagcaaaaggaagcggtctttcatacggaaggc
ccggtcctcattcttgcaggtgcaggctccggtaagacgagagtcctgactcacagaatt
gcctatctgatcgacaggtgcagcgtcaatccatggaatatcatggcgatcacctttacg
aataaggcagcaggtgagatgagggaacgcgttgacaatattgtaggttatggtgcggag
agcatttgggtgacgacgttccattccagttgtgtgagaatgctgcggcggtacatagac
aggcttggttacgataacaattttacgatctatgataccgacgatcagaagaccgtcatg
aaagacatatgtaaacggttggagatcgataccaaaatgctgaaggagaggacaatcctc
tcagcgatctcttccgcgaaaaatgagtgtatttctccgacggaattcgagctgaatgcc
gccggggattttactgcgcagaaaatttccaaagtgtatggagagtatcagcggacgctg
aagaaaaacaatgcgcttgattttgacgatctgctcgtcaaagctgtggaattgttccgg
acttgtccggatgtgcttgagtattatcaagacagatttcgctatattatggtggatgaa
tatcaggataccaatacagtacagtttgaatatatccgtcttctttccgcaaagtacaga
aatctgtgtgtggtgggcgacgatgaccagtcgatctataaatttcgcggtgccaatatc
agaaatattctggactttgaaaaggtatatccggaggcgaaagtcatcaagctggagcag
aattatcgttccacgcaaaatgtgctcgacgcggcgaaccaggtaatccgcaataatatt
ggcaggaaagaaaaggcgctctggacgaataagggcgctggcaatgccattcatttccgg
caatttgaaacggcatatgacgaagcggaatatattacggaagacatccgcaggaaaaag
cgggaagcgacggcagactatggagcgtgcgcagtactctttcgaacgaacgcacaggcc
cgtctgctggaggagcgttttgtcgttgccggcataccctatgatgtagtgggcggtgta
aacttctatgccaggaaagagatcaaagatctcctggcttatttaaagaccattgacaat
ggcaaggacgatgtggcggtaaaacggatcatcaatattcccaggcgggggatcggcgcc
gccacgatcgccagagtgcagagccatgcggatgagcggcagatcagtttctatgacgct
ctgagggaggcggatcagattatggccatcggcaaaagcgctgccaagttgcagcctttt
gtgacactgatccaggggtttcgtggaaaactggagtattatggattgcaggaattgctg
caggatattattgatacgacaggctatgtaaaggctctggaggaatccggggaagaggat
gcggaaaacagaattgaaaatatcgacgaattgatgaataaagtgatcgcttatgaggac
agccatgaggagccaagcctgagcgggtttctggaagaagtggcgctcgtggccgatatt
gacaatgtgtcggatgacgacaacagagtattgttgatgacactgcacagtgccaaagga
ctggaatttccccatgtatatcttgcaggcatggaggatggcgtgttcccgagttatatg
acgatcacagcggatgatcctcttgaaatagaagaagagcgtcggctcgcctatgtgggt
attacgagagcgagagaggatctgacgctgacgtgtgcaagggcgcgtatggtccggggc
gagacgcagtataatatggtcagccggtttgtgagggagatacaggaggaacttttagat
cataagccacctgcggtcaaaaagcggggctgggaagattattcaaatgataccagtgtc
agaagtcatttccgggagaagccctttggaggagatttcagtggatttggcggtgacagc
ggcggaagaaaaagttcggaaggtggatttggcggcggccgaaagataagtgcaatgggt
tctgccagcgggctgggcggcggtgtaggtgttaccagaccggtgaatgatccccggctc
aggcccaaagcgatcgttacaccgcgcaggacagaagaagaaaaccggcctttttttaca
aaaggagccgcatcaggcgtcagcttatctaagggggcacctgccggagaaagaccggat
tacgaagtgtctgaccgggtgagacatgtgaaatatggagaagggactgtacgcaatatc
gaagagggcgtcagggactaccaggtgacagttgaattcgacggtgcggggacgaaagtc
atgtacgccgccttcgcaaaattaaaaaaagtctga
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