Lachnospiraceae bacterium JLR.KK008: V1224_06060
Help
Entry
V1224_06060 CDS
T10585
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
lbp Lachnospiraceae bacterium JLR.KK008
Brite
KEGG Orthology (KO) [BR:
lbp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lbp03032
]
V1224_06060 (topA)
03400 DNA repair and recombination proteins [BR:
lbp03400
]
V1224_06060 (topA)
Enzymes [BR:
lbp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
V1224_06060 (topA)
DNA replication proteins [BR:
lbp03032
]
Prokaryotic type
DNA Topoisomerases
V1224_06060 (topA)
DNA repair and recombination proteins [BR:
lbp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
V1224_06060 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
Zn_ribbon_Top1
Toprim_4
Zn_ribbon_recom
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
WWR16992
LinkDB
All DBs
Position
1215867..1217960
Genome browser
AA seq
697 aa
AA seq
DB search
MAKYLVIVESPAKVKTIKKFLGANYEVAASNGHVRDLPKSQLGIDVEHDFEPKYITIRGK
GDILANLRKAVKKAEKVYLATDPDREGEAISWHLLHTLKLEGKKVYRITFNEITKSAVRE
SLKNAREINMDLVDAQQARRVLDRMVGYRISPLLWAKIKRGLSAGRVQSVALRIICDRED
EINAFIPEEYWSLDVLLDVDGEKKPLTAKYYGTRDAKKTIGSKEELDRILKDLEGSSYQV
DEVKRGERTKKPPLPFTTSTLQQEASKVLNFSTQKTMRLAQQLYEGIDIKGSGTTGIISY
LRTDSTRVSEEAAQLAKAYIVQQYGADYVAGTGGGKKSGQKIQDAHEAIRPTDISRTPIS
LKGSLSRDQLRLYQLIWKRFTASQMAPARYETTSVKIGAGDHRFTVAASKIVFDGFMSVY
TNDDEDKQENNLLAGRIEKDSVLKFREFSSKQHFTQPQPHYTEASLVRALEELGIGRPST
YSPTITTILARRYVTKENRNLYVTELGEVVNNMMKEAFPSIVDVSFTANLEALLDKVEEG
VVGWKTIVSNFYPDLDEAVNRAQEELEHVQIADEVSDEVCELCGRQMVVKYGPHGRFLAC
PGFPDCRNTKPYFEKIGVACPKCGKDIVLKKTKKGRKYYGCIDNPDCDFMVWQKPATERC
GKCGSLMLEKGHKLVCMDETCGNIVEKHKNSDIVRIS
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaatatctggtaattgtagaatcacccgccaaagtaaaaacgatcaaaaagttt
cttggcgccaattatgaggttgcggccagcaacggacatgtaagggatttaccgaaaagt
cagctcgggatcgatgtggagcatgatttcgagccaaaatatataacgatcaggggaaaa
ggagacattcttgcaaacttgcgcaaggcggtgaagaaagcggaaaaagtatatctggct
accgaccctgaccgggaaggagaggccatatcctggcatctgctgcacacgctgaagctg
gagggcaagaaagtctaccggatcacattcaacgagattacaaagagtgcggtcagggaa
tctctgaaaaatgccagagagatcaacatggaccttgtggatgcccagcaggcgcgtcgt
gtgctggaccgtatggtaggctaccgaatctcgccgcttttgtgggcaaaaatcaagcgg
ggactttcggcgggcagagtgcagtcagtggcactgcgcatcatctgtgaccgggaagat
gagatcaatgcctttattccggaggaatattggagtctggatgttctcctggatgtggac
ggggagaaaaagccgctgaccgccaagtattatgggaccagggatgccaagaagacaatc
ggttcaaaagaagaactggaccggattctgaaggatctggaagggagctcctatcaggtg
gatgaagtgaagcggggagagcgtacgaagaaaccgccgcttccttttacaacttccaca
ttgcagcaggaagcaagtaaagtgctgaacttctccacacaaaagacaatgcgtctggca
cagcagctctacgaaggtattgacataaaggggagcggcacgacaggaattatttcctat
ctgcgtaccgactccacgagagtatcggaagaggcggcacagctggcgaaagcatatatc
gtgcaacagtacggagctgactatgtagcgggcacaggcggtggaaaaaagagcggacag
aaaatacaggacgctcacgaagcgatccgccctacggatatcagcagaacgccgatttct
ctgaaaggttctctcagccgggatcagctccggctgtatcagctgatctggaagcgtttt
accgcgagccagatggctccggccagatatgagacgacttcggtgaagatcggtgcaggg
gatcaccgttttacggttgccgcttctaaaattgtgtttgacgggtttatgagtgtgtac
acgaacgatgatgaggataaacaggaaaacaatctgctggccggcagaattgagaaagat
tccgtgctgaagttccgtgagttttcttccaaacagcatttcacacagccgcagccgcat
tatacggaggccagtctcgtgagggcgctggaggagctgggcattggcaggccgagtacg
tattcgcccacgatcacgacgattctggcccgccggtatgtgacgaaagagaaccggaat
ctttatgtgacagagctgggtgaggtcgtgaacaatatgatgaaagaagccttcccgagt
atcgttgacgtgagcttcaccgccaacctggaagcactgcttgacaaagtggaagaaggt
gttgtaggctggaagacgatcgtttccaatttttatcctgatctcgatgaggcagtcaac
agagcgcaggaagagctggaacatgtacagatcgccgatgaagtgtccgatgaggtgtgt
gagctttgcggccggcagatggtcgtaaaatacggtcctcatgggagatttctggcctgt
cccggttttccggactgcaggaataccaaaccatattttgaaaagatcggtgtagcctgt
ccgaaatgcggaaaggatattgttctgaaaaagacgaaaaaaggcagaaaatattatggc
tgtatcgacaatccggactgcgattttatggtatggcaaaaaccggctacggagaggtgt
gggaagtgtggttccctgatgttggaaaaagggcataaattggtgtgcatggacgaaact
tgtgggaatattgtggaaaaacataaaaattcagatattgtacgaatttcataa
DBGET
integrated database retrieval system
