Lachnospiraceae bacterium JLR.KK008: V1224_06250
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Entry
V1224_06250 CDS
T10585
Name
(GenBank) FliA/WhiG family RNA polymerase sigma factor
KO
K02405
RNA polymerase sigma factor FliA
Organism
lbp Lachnospiraceae bacterium JLR.KK008
Pathway
lbp02020
Two-component system
lbp02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
lbp00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
V1224_06250
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
V1224_06250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lbp03021
]
V1224_06250
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
lbp02035
]
V1224_06250
Transcription machinery [BR:
lbp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
V1224_06250
Bacterial motility proteins [BR:
lbp02035
]
Flagellar system
Flagellar assembly proteins
Stator
V1224_06250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r4_2
Sigma70_r3
UPF0122
GerE
Sigma70_ECF
Utp11
HTH_WhiA
Motif
Other DBs
NCBI-ProteinID:
WWR17027
LinkDB
All DBs
Position
1250326..1251090
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AA seq
254 aa
AA seq
DB search
MDETARKKMWAEYARTKRPDIREKIILEYAPLVKVVAGRLSMYLGYNVEYEDLVSYGIFG
LIDAIDKFDSLKEVKFETYASLRIRGAILDQIRKMDWIPRTIRQKQKKIDAVMREIETQT
GRPATDEEIAKSLGISDLEYVEWQSQMKITGIVSLNEYLEQGSDIPNDKNVSRYFDSPEK
AMEQSELAQVLKDSLTLLTEKERRVIELYYYEELTLKEISHILEVTESRISQLHTKALQK
MKTKMGHYMGILTD
NT seq
765 nt
NT seq
+upstream
nt +downstream
nt
atggacgaaacggccagaaaaaaaatgtgggccgaatatgcgcggaccaagcggccagac
atcagggagaagatcattttggagtatgcgcccctggtcaaagtggtggctggcaggctc
agcatgtatcttggatataatgtggaatatgaagatctggtcagttatggaattttcgga
ctgattgatgctatcgataaatttgattctctgaaagaagtgaagtttgagacgtatgca
agtttgcgtatccgtggagcaattttggaccagatacgcaagatggactggattcccaga
acaatacggcagaagcagaaaaagatagatgccgtaatgcgggagatcgagacacagaca
ggccgaccggcaacggatgaggagattgccaaatcgctggggatcagtgatctggagtat
gttgagtggcaatcgcagatgaagataacaggcattgtctctctgaacgaatatttggaa
caggggagtgatattcccaatgataaaaatgtgtccagatattttgacagtccggagaaa
gcgatggagcagagtgaattggcgcaggtgctcaaagattctctgactctcctgacggag
aaagagaggcgggtcattgaactttattattatgaggagctgacgttgaaagagatcagt
catatactggaagtgacagagtcgagaatatctcagttacatacgaaagcgttacagaag
atgaaaacaaaaatgggacattatatgggaattttaactgattaa
DBGET
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