Lonsdalea britannica: CKQ53_02240
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Entry
CKQ53_02240 CDS
T05623
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
lbq
Lonsdalea britannica
Pathway
lbq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lbq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CKQ53_02240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lbq03400
]
CKQ53_02240
DNA repair and recombination proteins [BR:
lbq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CKQ53_02240
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CKQ53_02240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_DNA-bind
UvrA_inter
ABC_tran
SMC_N
AAA_29
AAA_16
nSTAND1
RsgA_GTPase
DnaJ_CXXCXGXG
AAA_25
AAA_23
nSTAND3
NACHT
Viral_helicase1
cobW
DUF1924
ExoX-like_C
Mtrc-MtrF_II-IV_dom
Motif
Other DBs
NCBI-ProteinID:
AXW85913
UniProt:
A0AAD0SIP1
LinkDB
All DBs
Position
complement(463027..465858)
Genome browser
AA seq
943 aa
AA seq
DB search
MDNIEVRGARTHNLKNINLIIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLYARVGEPRC
PEHNVPLDAQTVSQMVDNVLAQPEDKRLMLLAPIVKDRKGEHTKTLENLATQGYIRARID
GEVCDLSDPPKLELQKKHTIEVVVDRFKVRSDLAQRLAESFETALELSGGSAVVADMDDS
SVAELLFSANFACPICGYSMHEMEPRMFSFNNPAGACPTCDGLGVQQFFDPSRVIQNQEL
SLAGGAIRGWDRRNFYYFQMLRSLAEHYEFDVDAPFNSLSADIQKVVLYGSGKQNIEFKY
INDRGDTSVRRHPFEGVLHNMERRYKETESTAVREELAKFISNRSCASCHGTRLREEARH
VYVAETTLPHISDMSIGQALSFFQNIELSGQRAKIAEKVLKEIGDRLRFLVNVGLNYLSL
SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLETLIHLRDLGNT
VIVVEHDEDAIRAADHVIDIGPGAGVHGGEVIAEGTVDQIMAVPESLTGQFLSGQRKIEV
PAERVPADPTKVLKLIGAKGNNLKDVTLTLPVGLFTCITGVSGSGKSTLINDTLFPLAQR
QLNGATIAESAPYRDIQGLDHFDKVIDIDQSPIGRTPRSNPATYTGVFTPIRELFAGVPE
SRTRGYNPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDIYVPCDQCKGHRYNRETLEIKY
KGKSIHEVLDMTIEDAREFFDAIPALARKLQTLIDVGLSYIRLGQSATTLSGGEAQRVKL
ARELSKRGTGQTLYILDEPTTGLHFADIQQLLAVLHQLRDQGNTIVVIEHNLDVIKTADW
IVDLGPEGGSGGGEILVSGTPETVAECKASHTARFLKPLLARD
NT seq
2832 nt
NT seq
+upstream
nt +downstream
nt
atggataatatcgaagttcgtggtgcccgtactcataatctcaagaatatcaatctgata
atccctcgcgataagctgattgtggtcacgggattatccggatccggaaagtcatcgctg
gcttttgacaccctctacgccgaggggcagcgacgttacgtagaatctctgtcagcgtat
gcccggcagtttttgtccctgatggaaaaaccggacgtcgatcatatcgaagggttgtcg
ccggctatttccattgaacagaagtcgacgtcgcataacccgcgttcgaccgtcggcacc
atcactgaaattcatgactacctgcgcctgctgtatgcccgcgtcggtgagccgcgctgt
ccggaacacaacgttccgctggatgcgcagaccgtgagtcagatggtggataacgtgctg
gcgcagccggaagacaagcggctgatgctgctggcgccgatcgtaaaagatcgcaagggc
gagcataccaaaacgctggagaatctggcgacgcagggttacatccgcgcccgaatcgac
ggcgaggtgtgcgacctgtccgatccgccgaagctggagctgcagaagaagcacaccatc
gaggtcgtcgttgaccgcttcaaggtccgcagcgatctggcccagcggttggcggagtcg
ttcgaaaccgcgctggagctgtccggcggcagcgccgtcgttgccgacatggatgacagc
agtgtggccgaactgctgttctccgccaactttgcctgtccaatctgcggctacagcatg
catgagatggaaccgcgcatgttctccttcaacaaccccgccggcgcgtgcccgacttgc
gatgggttaggcgtgcaacaatttttcgatccgtcccgcgtcatccaaaaccaggaactc
tctctggcgggcggggcgattcgcggatgggatcgccgcaatttttactacttccagatg
ttgcgatcgctggcggaacactacgagtttgatgtcgacgcaccgttcaacagcctgagc
gcggacattcaaaaggtcgtgctgtacggttccggcaaacagaacatcgaattcaaatac
attaacgaccgcggcgatacttcggtgcgacgacacccgttcgaaggggtgctgcacaat
atggagcgtcgctataaagaaacggaatcaacggcggtgcgcgaagagctggcgaagttt
atcagcaaccgctcctgcgccagctgccacggtacccgcctgcgcgaagaggctcgccac
gtctacgtggccgagaccacgctgccgcacatttccgacatgagcatcggtcaggcgttg
agttttttccagaatattgagctgagcggtcagcgggcgaagattgccgaaaaagtgttg
aaagaaatcggcgatcggctgcgcttcctggtgaacgtgggtctgaattatctgtcgctt
tcccgctcggcggaaacgctgtccggcggcgaggcgcagcgtatccggttggcgagccag
attggcgcggggctggtcggcgtaatgtacgtgctggacgagccgtccatcggtctgcat
caacgggacaacgaacgtctgttggaaacgttgatccacctgcgcgacctcggcaatacg
gtgatcgtggttgagcatgatgaggatgcgatccgcgccgccgatcacgtgattgatatc
ggtcccggcgccggggtgcatggcggcgaggtgatcgccgaaggcaccgtcgaccagatt
atggccgttcccgaatccctgaccgggcagttcctcagcggtcagcgaaaaattgaggtg
ccggctgaacgcgtaccggccgaccccaccaaggtactgaaattgatcggcgccaaaggc
aacaacctcaaagatgtgacgctgacgctgccggtaggattgtttacctgcatcaccggg
gtgtccggttcgggcaagtctacgctgatcaacgatacgctgttcccgctggctcagcgg
cagttgaatggcgccaccatcgctgaatccgcgccgtatcgcgatattcagggattggat
cacttcgacaaagtgatcgatatcgatcaaagcccgatcgggcgtacgccgcgctccaac
ccggcgacgtacaccggcgtgttcacgccgattcgtgagctgttcgccggcgtgccggaa
tcacgtacccgtggttataaccctggtcgtttcagctttaacgtgcggggcggccgctgc
gaagcgtgccagggcgacggcgtcatcaaggtcgagatgcacttcctgccggatatttac
gtgccgtgcgatcagtgcaagggccatcgctacaatcgtgaaacgctggagattaaatac
aaaggcaaaagcattcacgaagtgctggatatgacgattgaggacgcccgtgaattcttc
gacgccattccggcgctggcgcgtaagttgcaaacgctgatcgatgtcggcttgtcctac
atccgtttgggccagtcggccacgacgctgtcgggcggcgaggcgcaacgcgtcaagctg
gcgcgtgaactgtccaagcgcggcacaggccaaacgctgtacattctggatgaaccgacc
accgggctgcatttcgccgatatccaacagctgctggcggtactgcatcagctgcgcgat
cagggcaataccattgtcgtcatcgagcataatctggatgtgattaaaaccgccgactgg
attgtggatttaggaccggaaggcggcagcggcggcggtgaaatactggttagcggcacg
ccggaaaccgtggcggagtgcaaagcttcgcacaccgcgcgtttcctcaaaccactactg
gcgcgagactaa
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