Lonsdalea britannica: CKQ53_02610
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Entry
CKQ53_02610 CDS
T05623
Name
(GenBank) RNA polymerase-binding ATPase
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
lbq
Lonsdalea britannica
Brite
KEGG Orthology (KO) [BR:
lbq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lbq03021
]
CKQ53_02610
Transcription machinery [BR:
lbq03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
CKQ53_02610
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
RapA_C
Tudor_1_RapA
Tudor_RapA
Helicase_C
SNF2-rel_dom
ResIII
DEAD
Cas3-like_C_2
FeS_hyd_N
AAA_34
Motif
Other DBs
NCBI-ProteinID:
AXW85979
UniProt:
A0AAD0SDF6
LinkDB
All DBs
Position
551587..554493
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AA seq
968 aa
AA seq
DB search
MPFTLGQRWISDTESELGLGTVVAVDARMVTLLFPASGENRLYSRNDAPITRVMFNPGDT
VTSHEGWQMQVDEVIDENGLRTYIGLRLDDETPALLREVFLDSKLTFNKPQDRLFAGQLD
RMDRFALRYRARQHLHAQALQPWNGLRGMRASLIPHQLYVAHEVGQRHAPRVLLADEVGL
GKTIEAGMIIHQQLLSGRAERVLIVVPETLQHQWLVEMLRRFNLLFSLFDDERYAEALLD
SSNPFETEQLIICSLSFVQRNPKRFEQLANANWDLLVVDEAHHLTWSEAEPSPQYQAIER
LASVTPAVLLLTATPEQLGQESHFARLRLLDPNRFHDYAEFVAEQQRYQPVADAVTQLLT
GDEASPEDLQALTSLLGGQDISELLQAINASDEDAARSAREELITLLMDRHGTSRVLFRN
TRQGVQGFPERQLQTIPLPLPSQYQTAIKVSGIMSGAKTSEKRAQDMLYPEQIYQQFEDE
NATWWSFDPRVEWLLDYLTSHRDEKVLVICAKAASALQLEQALRTREAIRAAVFHEGLSI
LERDRAAAYFASEEEGAQVLICSEIGSEGRNFQFASHLVMFDLPFNPDLLEQRIGRLDRI
GQENDIQILVPYLEQTAQALLVRWYHEGLDAFEHTCPTGRSIYDSHYDRLIGLLAHPEEQ
DGVDDFIRECREQHDALKAQLEQGRDRLLEMHSNGGEQAKKLSTDIAAQDDDVTLVNFAL
NLFDIIGIHQEDRSDNLIVLRPSEHMLVPDFPGLSQDGCTITFDREQALSREDAQFISWE
HPLIRNGLDLILSGDTGSCAVSLLKNKALPVGTLLAELVYVVEAQAPKKLQLTRFLPPTP
VRILLDRKGTDLAAQVEFESFNRQLAAVNRHTASKLVNAVQPDVHDMLQKAEPLVAEQAR
KVIATATQFADKALRHELERLTALKAVNPNIREDELQALETQREQVLLNLEQANWRLDAI
RLVVVSHQ
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgccttttacacttggtcagcgctggatcagcgacacagaaagcgaattaggattggga
acggtagtggcggttgatgccagaatggttaccctgctgttcccagccagcggcgagaat
cgcctctattcccgcaatgatgcccccatcacccgggtcatgttcaatccgggcgatacc
gtcaccagccatgagggttggcagatgcaggtcgacgaagtcatcgacgaaaacggtctg
cgcacgtatatcggcctgcggctcgacgatgaaacgcccgccctgctgcgcgaagtgttt
ctggacagcaaactgactttcaataagccgcaggatcgcctgttcgccggccagcttgac
cggatggatcgctttgctctgcgctatcgcgcccgtcagcacctgcacgctcaggccctg
cagccgtggaacggtttgcgcgggatgcgcgccagcctgatcccccaccagctgtatgtc
gcgcacgaagtcggccagcgccacgcgccgcgcgttctgctggcggatgaagtgggtctg
ggaaaaaccatcgaagccgggatgatcatccatcaacagctgctgtcaggccgtgccgag
cgcgtgctgatcgtggtgccggaaaccttgcagcaccagtggctggtggaaatgctgcgc
cgcttcaacctgctgttctcactgttcgacgacgaacgctacgccgaagcactgctggat
agcagcaacccgttcgaaaccgaacagctgattatctgttcgctgagttttgtccagcgc
aacccgaaacgttttgaacagctggccaacgccaactgggatctgctggtggtcgacgaa
gcgcatcacctcacctggagcgaagccgagccgagcccgcagtatcaggctatcgagcga
ctggcgagtgtcaccccggcggtgctgctgttgaccgcgaccccggaacagctgggtcag
gaaagtcacttcgcccgcctgcgtctgttggatccgaaccgcttccacgactacgccgaa
tttgtggccgagcagcagcgctatcagccggtggccgatgcggtgacccagctgctgacc
ggcgacgaggccagcccggaggatcttcaggcgctgacgtcgctgctgggcggacaggac
atcagcgagctgctgcaagccatcaacgcctcggacgaggatgcagcgcgttcagcacgc
gaagaactcatcaccctgctgatggaccgccacggcaccagccgcgtgctgttccgtaac
acccgtcagggcgtgcagggcttcccggaacgtcagctacagaccatcccgctgccgctg
ccttctcagtatcagacggcgatcaaggtttccggcatcatgtccggcgccaaaacctcc
gagaagcgcgctcaggacatgctgtatcccgagcaaatttatcagcagttcgaagatgaa
aacgccacttggtggagcttcgatccgcgcgtagagtggctgctcgactacctgaccagc
catcgcgatgagaaggtgctggtgatctgcgccaaagccgcctcggcgctgcagttggaa
caggcgctgcgcacgcgggaagccatccgcgccgcggtattccatgaaggtttgtcgatt
ctggaacgcgaccgcgccgccgcctactttgcctcggaagaggaaggcgctcaggtgctg
atctgctccgaaatcggctccgaaggccgcaacttccagttcgccagccatctggtgatg
tttgacctgccgttcaaccctgacctgctggagcagcgcatcgggcgtctggatcgtatc
ggtcaggagaatgacatccagattctggtgccttatttggaacagaccgcgcaggcgctg
ctggtccgttggtatcacgaaggtctggacgcattcgaacatacctgcccgaccggccgc
tcgatttacgacagccattacgatcgtctgatcggtctgctcgctcatccggaagagcag
gacggcgtcgacgactttattcgcgaatgccgtgaacagcacgatgcgctgaaagcccag
ttggaacagggtcgcgaccgcctgctggaaatgcattccaacggcggcgaacaggcgaaa
aagctgtccaccgatatcgccgcgcaggacgacgacgtcacgctggtcaactttgcgctc
aacctgttcgacatcatcggcatccatcaggaagatcgcagcgacaacctgatcgtattg
cgtccgtcggaacatatgctggtgccggacttccccggtttgtctcaggacggctgtacg
atcacctttgatcgcgagcaggcgttgtcccgcgaggatgcgcagttcatcagttgggag
cacccgctcatccgtaacggactggatctgatcctgtccggcgataccggcagctgcgcc
gtatcgctgctgaaaaacaaagcgctgccggtcggcacgctgctggcggaactggtgtat
gtggtagaggcgcaggcgccgaaaaaactgcagctcacccgtttcctgccgccgacgccg
gtacgcatcctgctggatcgcaaaggcaccgatctggccgcgcaggtggagttcgaaagc
ttcaaccgccagctggccgcggtcaaccgccacaccgccagcaaactggtgaacgccgtc
caacctgacgtgcatgacatgctgcaaaaagcggagccgctggtcgccgaacaggcccgg
aaggtgattgcgacggccacccagttcgccgataaagcgctgcggcacgagctggaacgc
ctcacggcgctcaaagcggtcaaccccaacatccgcgaagatgagctacaggcgctggaa
acccagcgggaacaggtgctgctgaatctcgaacaggcaaactggcgtctggacgccatc
cgtctggtcgtggtttcacaccaataa
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