Lonsdalea britannica: CKQ53_04200
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Entry
CKQ53_04200 CDS
T05623
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
lbq
Lonsdalea britannica
Pathway
lbq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lbq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CKQ53_04200 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lbq03021
]
CKQ53_04200 (rho)
03019 Messenger RNA biogenesis [BR:
lbq03019
]
CKQ53_04200 (rho)
Transcription machinery [BR:
lbq03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CKQ53_04200 (rho)
Messenger RNA biogenesis [BR:
lbq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CKQ53_04200 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_22
AAA_25
S1CSD-TOTE-2
AAA
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
AXW86260
UniProt:
A0AAD0SFA4
LinkDB
All DBs
Position
complement(890023..891282)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN
YDKPENARSKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP
KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPSSGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY
NRSGTRKEELLASSEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDEFFDMMKRS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaccgaattaaagaatacgccagtttctgagttgatcactcttggcgaaaat
atggggctggaaaacctagcccgcatgcgtaaacaggacattattttcgccatactgaag
cagcatgcaaagagtggcgaagatattttcggcgatggtgtgctggaaatattgcaggat
gggtttggctttctacgttccgccgacagctcctacctcgccggtcctgatgatatctac
gtttctcccagccaaatccgtcgtttcaacctccgtactggcgataccatttccggtaaa
attcgcccccccaaagaaggcgagcgctacttcgctctgctgaaagtcaatgaagtcaac
tacgacaaaccggaaaatgcccgcagtaagattctgttcgaaaacctgacgccactgcat
gcgaattcgcgtctgcgtatggaacgcggcaacggttcgaccgaagatttgacggcacgc
gtactggatctggcttccccgattggtcgcggtcagcgtggtctgattgtggcgccgccg
aaagcgggtaaaaccatgctgctgcagaatatcgcgcagagcattgcctacaatcaccca
gactgcgtgctgatggtgctgctgatcgacgaacgtccggaagaagtgaccgagatgcag
cgtctggtgaaaggcgaagttatcgcgtctacctttgacgaaccggcgtctcgccacgtc
caggttgccgaaatggtgattgaaaaagcgaaacgtctggttgagcacaagaaagacgtc
atcattctgctggactccatcacccgtctggctcgtgcctacaacaccgtcgttccgtcc
tccggtaaagtgttgaccggtggtgtagacgctaacgccctgcatcgtccgaagcgtttc
ttcggtgcggcacgtaacgtcgaggaaggcggtagcctgacaatcatcgccacggcgctg
gtcgataccggttcgaagatggacgaagtgatttacgaagagtttaaaggtaccggtaac
atggaactgcatctctctcgtaaaatcgcagaaaaacgcgtcttcccggccattgattac
aaccgttccggcacgcgtaaagaagagctgcttgccagctccgaagagctgcagaaaatg
tggattctgcgtaagatcattcacccaatgggtgagatcgacgcgatggaattcctcatt
aacaaactggcgatgacgaagaccaatgatgagttcttcgacatgatgaagcgttcgtaa
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