Lonsdalea britannica: CKQ53_06205
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Entry
CKQ53_06205 CDS
T05623
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lbq
Lonsdalea britannica
Pathway
lbq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lbq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CKQ53_06205 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lbq03021
]
CKQ53_06205 (rpoC)
03400 DNA repair and recombination proteins [BR:
lbq03400
]
CKQ53_06205 (rpoC)
Enzymes [BR:
lbq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CKQ53_06205 (rpoC)
Transcription machinery [BR:
lbq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CKQ53_06205 (rpoC)
DNA repair and recombination proteins [BR:
lbq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CKQ53_06205 (rpoC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AXW86623
UniProt:
A0AAD0SF52
LinkDB
All DBs
Position
1331125..1335348
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLEKRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERVYRAG
LASLHARVKVRITQEIKNIEGETTHQTSIIDTTIGRAILWMIVPKGLPYSIVNQPLGKKA
ISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPAKKAEIIEEAETE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSVEDVVNRDGVVEQQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRERVL
GRVTAEDVIKPGTADILVPRNTLLNEQWCDLLEENSVDSLKVRSVVSCETDFGVCAKCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGTLKL
SNAKYVKNSADKLVITSRNTELTLIDEFGRTKESYKVPYGAVMAKGDGEAVAGGETVANW
DPHTMPVITEVSGNIRFTDMIDGQTITRQTDELTGLSSIVVLDSAERTGGGKELRPALKI
VDDNGEDVLIPGTDMPAQYFLPGKAIVQLEDGVKIGSGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFE
GERVERGDVISDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKGTIASAGSTEFLEGEQAEVSRVKIANRQLEADGKIPATYSRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRQAGEPVA
VPQVSADEASANLAELLNAGFGNSDDK
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaagcgcaaactaagaccgaagagtttgatgcgatc
aaaattgctctggcatcgccagacatgatccgttcgtggtcttttggtgaagttaaaaag
ccggaaaccattaactaccgtacgttcaaaccagaacgtgacggtctgttctgcgcccgt
atcttcgggccggtaaaagattacgagtgcctgtgcggtaagtacaaacgcctgaagcac
cgtggtgttatctgtgagaagtgtggcgttgaagtgacccagaccaaagtacgccgtgag
cgtatgggccacatcgagctggcttctccgactgcgcacatctggttcctgaaatcgctg
ccatcccgcatcggtttgctgctggatatgccgctgcgtgatatcgaacgcgtcctgtac
ttcgaatcctatgtggttatcgaaggcggcatgaccaaccttgaaaagcgccagatcctg
acggaagagcagtatctggatgcgcttgaagagtttggtgacgaattcgacgccaagatg
ggcgccgaagcgattcaggccctgttgaaaaacatggatctggagcaggagtgcgaacag
ctgcgtgaagagctgaacgaaaccaactctgaaaccaaacgtaaaaagctgaccaagcgt
atcaagctgctggaagcgttcgtacagtccggcaacaagccggaatggatgatcctgacc
gtgctgcctgtattgccgccggacctgcgtccgctggtaccgctggacggcggtcgtttc
gctacgtcggatctgaacgatctgtatcgtcgcgtgatcaaccgtaacaaccgtctgaaa
cgtctgctggatctggctgcgccggacatcatcgtgcgcaacgaaaaacgtatgctgcag
gaagcggtggatgcgctgctggataacggccgtcgcggtcgtgccatcaccggttccaac
aagcgtccgctgaaatctttggccgatatgatcaaaggtaagcagggtcgtttccgtcag
aacctgctgggtaaacgtgtcgactactccggtcgttccgttatcaccgtaggtccgtac
ctgcgtctgcatcagtgcggtctgccgaagaaaatggcgctggaactgttcaaaccgttc
atctacggcaagctggaactgcgtggcctggctacgacgatcaaagcagccaagaaaatg
gttgaacgcgaagaagcggtcgtatgggacatcctggatgaagtcatccgcgaacacccg
gtactgctgaaccgtgcgcctaccctgcaccgtctgggtattcaggcatttgaaccggtt
ctgatcgaaggtaaagcgattcagctgcacccgctggtgtgtgctgcgtataacgccgac
ttcgatggtgaccagatggctgttcacgtaccgttgacgctggaagcccagctggaagcg
cgtgcgttgatgatgtcgaccaacaacatcctgtcaccagcgaacggcgagcctatcatc
gttccgtctcaggacgttgtattgggtctgtactacatgacccgtgactgtgttaacgcc
aaaggcgaaggcatggttctgactggaccgaaagaagctgaacgcgtctatcgtgctggt
ctggcttctctgcatgcgcgcgtcaaagtgcgtattacgcaagagatcaagaacattgaa
ggcgaaaccacgcatcagaccagcatcatcgatacgaccattggtcgtgcgattttgtgg
atgatcgtgccgaaaggtctgccgtactcgatcgttaaccagcctctgggcaagaaagcg
atctccaaaatgctgaacacctgttaccgcattctgggcctgaagccgaccgttatcttt
gctgaccagatcatgtacaccggttttgcttacgctgcgcgctctggtgcgtccgtaggt
atcgacgacatggttatcccggcgaagaaagccgaaatcatcgaagaagcggaaaccgaa
gttgccgagattcaggagcagttccagtctggtctggttaccgcgggcgaacgctacaac
aaagttatcgatatctgggctgcggcgaacgaacgtgttgccaaggcgatgatggaaaac
ctgtctgttgaagacgtggttaaccgtgatggcgttgttgagcagcaggtttctttcaac
agcatctttatgatggccgactccggtgcgcgtggttctgctgcacagattcgtcagttg
gcaggtatgcgtggtctgatggcgaagccggatggctccatcatcgaaacgccgatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctcaacccacggtgctcgt
aaaggtctggcggataccgcactgaaaaccgctaactccggttatctgacccgtcgtttg
gtcgacgtggcgcaggatctggtggtaacggaagacgattgcggaacgcacgaaggcatc
atgatgactccggtcatcgaaggtggcgacgttaaagaaccgctgcgtgaacgtgttctg
ggtcgtgtaacggccgaagacgtgatcaaaccgggtacggctgacattctggttccgcgt
aacacgctgttgaacgaacagtggtgtgacctgctggaagaaaactccgtcgattcgctg
aaagtacgctctgtcgtaagctgtgaaaccgactttggcgtgtgcgccaaatgttacggt
cgcgacctggctcgtggtcacatcatcaacaagggtgaagccatcggggttatcgcggca
cagtccatcggtgaaccgggtacccagctgaccatgcgtaccttccacatcggtggtgcg
gcatctcgtgcggcagcagaatctagtatccaggtgaaaaacaagggtacgctgaaactg
agcaacgccaagtacgttaagaacagcgcagacaagctggtgattacttctcgtaacacc
gaactgacgctgatcgacgaatttggtcgtacgaaagaaagctataaagtgccttacggt
gctgtgatggcgaaaggcgacggcgaagccgtagctggtggcgaaaccgtagcaaactgg
gatccgcacaccatgccggttatcacggaagtgagcggtaacattcgcttcaccgacatg
attgacggccagaccattacgcgtcagaccgatgagctgaccggtttgtcctccatcgtg
gttctggatagtgcagaacgtaccggtggtggtaaagaactgcgtccggcgctgaaaatc
gtggacgacaacggcgaagacgttctgattccgggtaccgatatgccggctcagtacttc
ctgccgggtaaagcgattgtccagctggaagacggcgtgaaaatcggctctggtgacacc
ctggcccgtattccgcaggaatccggcggtaccaaggatatcaccggtggtctgccgcgc
gttgctgacctgttcgaagcccgtcgtccgaaagagccggcaattctggctgaaatcagc
ggtatcatttccttcggtaaagaaaccaaagggaagcgccgtctggtgatcaccccggtt
gacggtagcgatccgtacgaagagatgattccgaaatggcgtcagctcaacgtgttcgaa
ggtgaacgcgttgaacgtggtgacgtgatctccgatggtcctgagtctccgcacgacatc
ctgcgtctgcgtggcgtgcatgcggtgacccgttacatcaccaacgaagtgcaggaagtt
taccgcctgcagggcgttaagattaacgataagcacatcgaagttatcgttcgtcagatg
ttgcgtaaaggcaccatcgccagcgcgggtagcactgagttcctggaaggcgaacaggct
gaagtgtctcgcgtcaagatcgccaaccgtcagttggaagccgacggcaagattccggca
acctacagccgcgacttgctgggtatcaccaaggcgtctctggcgaccgagtccttcatc
tctgcggcctcgttccaggaaacgacgcgcgtacttaccgaagccgcagtggctggtaag
cgtgatgaactgcgcggtctgaaagagaacgtgatcgtgggtcgtctgatcccggccggt
accggttatgcataccatcaggatcgtatgcgtcgccgtcaggctggcgaacccgttgct
gttccgcaggtcagcgcggatgaagcttcggctaacctggctgagctgctgaacgccggt
ttcggcaacagtgacgacaagtaa
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integrated database retrieval system
