Lonsdalea britannica: CKQ53_07965
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Entry
CKQ53_07965 CDS
T05623
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lbq
Lonsdalea britannica
Pathway
lbq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lbq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CKQ53_07965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbq03019
]
CKQ53_07965
03009 Ribosome biogenesis [BR:
lbq03009
]
CKQ53_07965
Enzymes [BR:
lbq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CKQ53_07965
Messenger RNA biogenesis [BR:
lbq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CKQ53_07965
Ribosome biogenesis [BR:
lbq03009
]
Prokaryotic type
rRNA helicases
CKQ53_07965
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
Cas3-like_C_2
CMS1
DeaD_C
AAA_22
AAA_19
Motif
Other DBs
NCBI-ProteinID:
AXW86924
UniProt:
A0AAD0SFI7
LinkDB
All DBs
Position
1701656..1703515
Genome browser
AA seq
619 aa
AA seq
DB search
MTKLETSFADLGLSAPIINALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF
AVPLLNNLKPELKAPQILVLAPTRELAVQVSEACNDFAKHMHGVNVVALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPAE
HQTALFSATMPEAIRRITRRFMKDPQEVRIQSSLTTRPDISQSYWMVHGVRKNEALIRFL
EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKNGRLDILI
ATDVAARGLDVDRISLVVNYDIPMDAESYVHRIGRTGRAGRAGRAILFVDNRERRLLRNV
ERTMKLTIPEVELPNAELLGERRLAKFAAKVQLQLESSDLDMYRALLAKLQPQEELDMET
LAAALLKMAQGERPLILPPDPVFDRRPRREMRDRDDRFERRREGGRDNARDGDRPQRRER
RDVGDMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTIELPKGMPGD
ILSHFTRTRILNKPMNMQLLGDAQPHERREGGRGGRSFGDRPNGGRPGNGGRGRSFSGER
REGGGERRGNRAPRQPSNS
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atgactaagcttgaaacctcttttgccgatttggggctgtctgctccgattattaatgcc
ctaaccgatctgggctacgaaaagccttcgccgattcaggcggaatgtattcctcacctg
ctgaatggtcgtgatgtgctgggtatggcacagaccggcagcggtaaaaccgccgcattt
gcggtgccgttattgaataacctgaaacctgaactgaaagcaccgcagattctggtgctg
gcgccgacccgtgagctggcggttcaggtctctgaagcctgtaatgacttcgccaaacac
atgcatggcgtcaacgtggttgccctgtacggtggtcagcgttatgacgtacagctgcgc
gctttgcgtcagggaccgcagattgtggtcggtacgccgggtcgtttgcttgaccatctg
aaacgcggcacgctggacctgtccaacctgagcggtctggtactggatgaagctgatgaa
atgctgcgtatgggcttcatcgaagacgtagaaaacatcatggcgcagatcccggctgaa
catcagaccgcgctgttctccgcgacgatgccggaagcgattcgtcgtattacccgtcgt
ttcatgaaagatccgcaggaagtgcgtattcagtcaagcctgacgacgcgtccggatatc
agccagagctactggatggtacacggcgttcgtaaaaacgaagcgctgatccgtttcctc
gaagcggaagattttgatgccgcgattatcttcgtgcgtaccaaaaacgcgacgctggaa
gtggctgaagcgctggagcgcagtggttacaacagtgctgcactgaacggtgacatgaac
caggccctgcgtgaacaaacgctggaacgtctgaaaaatggtcgtctggatatcctgatt
gcgactgacgttgctgctcgtggtctggatgttgaccgcattagcctggttgtgaactac
gatatcccgatggatgcggaatcctacgttcaccgtatcggccgtaccggtcgtgcgggt
cgtgccggccgtgcgatcctgttcgttgataaccgcgaacgtcgcctgctgcgtaacgtt
gagcgcaccatgaagctgaccattcctgaagtggaactgccgaacgctgaactgctgggc
gaacgtcgtctggccaagtttgccgccaaggttcaactgcagctggaaagcagcgatctg
gatatgtaccgtgcgctgttggctaaactgcagccgcaggaagagctggacatggaaacg
ctggctgctgcgctgctgaaaatggcgcagggcgaacgtccgctgattctgccgccggat
ccggtattcgatcgccgtccgcgtcgtgaaatgcgcgatcgtgacgatcgtttcgagcgt
cgccgtgaaggtggccgtgataatgcgcgtgacggtgaccgtccgcagcgtcgtgaacgt
cgtgatgtcggcgacatggaactgtatcgtatcgaagtaggccgtgatgatggcgttgaa
gtgcgtcacatcgtgggcgcgattgccaatgaaggcgatatcagcagccgttacatcggt
aacatcaaactgttcggtactcattctacgattgagctgccgaaagggatgccgggcgat
attctgtcacacttcacgcgcacgcgtattctcaacaaaccgatgaacatgcagcttctg
ggcgatgcccagccgcacgagcgtcgtgaaggtggccgtggtggtcgttcattcggcgat
cgtcctaacggtggtcgtccgggtaacggcggtcgtggtcgctctttcagcggcgaacgt
cgtgaaggcggtggtgaacgtcgcggtaaccgtgcgccacgtcagccgtccaactcgtaa
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