KEGG   Lonsdalea britannica: CKQ53_08040
Entry
CKQ53_08040       CDS       T05623                                 
Name
(GenBank) RNA polymerase subunit sigma-24
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
lbq  Lonsdalea britannica
Pathway
lbq02020  Two-component system
Brite
KEGG Orthology (KO) [BR:lbq00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    CKQ53_08040
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lbq03021]
    CKQ53_08040
Transcription machinery [BR:lbq03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     CKQ53_08040
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_r4 GerE HTH_23 Sigma70_ECF HTH_28 PhyR_sigma-like
Other DBs
NCBI-ProteinID: AXW86939
UniProt: A0AAD0SFJ7
LinkDB
Position
complement(1720223..1720765)
AA seq 180 aa
MSAVNVPTTPDFCQLYQQHHGWLQSLLRKRLGNRCDASDLAQDVFLQLLMKPREFDSHHG
TRAYLSVMAQGMCVDLWRRKALEQAWLESLQHHAADASLSAEQSSIVLETLFQVDGMLRH
LPEKTRSAFVMSQIQGMTYAQIASVLNVSERMVKKYMTQAMLHCILLETESDAEPPTRSR
NT seq 543 nt   +upstreamnt  +downstreamnt
atgtctgcggttaacgtaccgaccacgcctgatttttgtcagctctaccagcagcaccac
ggctggttgcagagcttgctgcgtaaacgcctgggaaaccggtgcgacgcatccgatctg
gcgcaggacgtttttctacagttactgatgaaacctcgcgagttcgacagccaccacggc
acccgcgcttatctcagcgttatggcgcagggaatgtgcgtcgatctttggcgacgcaag
gcgctggaacaggcctggctggagtcgctacaacaccatgcggcggatgcctccctgtcg
gccgaacagagctccatcgtgctggaaacgttgtttcaagtggacggcatgctgcgacat
ctcccggaaaaaacgcgctcggcgtttgtgatgtcgcaaattcaggggatgacctatgcg
cagatcgcttcggtgctcaacgtgtctgaacgtatggtgaaaaagtatatgacgcaggcc
atgctgcactgcattcttctcgaaacagaatccgacgccgaaccgccgacccggtcccgc
taa

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