Lonsdalea britannica: CKQ53_12835
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Entry
CKQ53_12835 CDS
T05623
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
lbq
Lonsdalea britannica
Brite
KEGG Orthology (KO) [BR:
lbq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lbq03016
]
CKQ53_12835
Enzymes [BR:
lbq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CKQ53_12835
Transfer RNA biogenesis [BR:
lbq03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
CKQ53_12835
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
AXW87768
UniProt:
A0AAD0WLT7
LinkDB
All DBs
Position
complement(2828713..2830644)
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AA seq
643 aa
AA seq
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MFQDNPLLAQLKQQLHSKTPRVEGVVKGTDKGFGFLEAEAQKSYFIPPPHMKKVMHGDRI
VATLHTEKDREIAEPESLIEPFLTRFVGRVQKKDDRLSITPDHPLLKDAISCRVARQLDH
EIQDGDWAVAEMRRHPLKGDRNFHAEITEYITTGDDPLAPWWVTLSRHNLERNAPEHDAA
EMNDGELTREDLTALDFVTIDSASTEDMDDALYVRDNGDGTLEMTVAIADPTAYVPADSE
LDTVACKRAFTNYLPGFNIPMLPRHLSDDICSLRPQERRPVMACRVTLAADGAMSDIQFF
AAWIESRAKLVYDEVSDWLEQKGEWQPENEAIATQIRLLHKMSQLRSAWRTTNALVFKDR
PDYRFLLGEKGEVLDIVVEPRRIANRIVEEAMIAANVCAAIVLREKLGFGIYNIHNGFDP
VTVEQAVAILESNEIQADPQQILTLEGFCVLRRQLDALPTQFLDSRMRRFQSFAEISTEP
GPHFGLGLEAYATWTSPIRKYGDMVNHRLLKAIITGQSAEKPRDEVTVQLAERRRLNRMA
ERDVSDWLYARYLKPHAGTDARFLAEIMDVTRGGLRVRLLDNGATAFIPASFIHAVRDEL
VCSQDTGTVTIKGEVVYRQSDKLDVMLKEVRLETRSIIAKPAA
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagataatccgctgcttgcacagcttaaacagcaactccactctaagacgcca
cgtgtagaaggcgtcgtaaaaggcaccgataagggatttggttttcttgaagccgaagca
cagaagagctacttcatcccgccgccgcacatgaaaaaagtgatgcacggcgaccgcatc
gttgcaacgctgcataccgaaaaagatcgtgaaatcgccgagccggaatcgctgatcgaa
ccgtttctgacccgttttgtcggccgcgtccagaagaaagacgaccgcctgtcgatcacc
ccggaccatcctttgctcaaggatgcgatcagctgccgagtggcgcgtcaactggaccac
gagattcaggacggcgactgggcggtcgcagaaatgcgccgccacccgctcaaaggcgac
cgtaatttccatgcggaaatcacagaatacattaccactggcgacgatccgctggcgccg
tggtgggtgacattgtcacgtcataatttggagcgtaacgcgccggagcacgacgccgcc
gagatgaatgatggcgaactcacgcgtgaagacttaaccgcgctggattttgtcaccatc
gacagcgcgagtaccgaagatatggatgacgcgctgtatgtccgcgacaacggcgacggc
acgctggaaatgaccgtggcgatcgccgatccaacggcctatgtgccggccgacagcgag
ctggatacggtcgcgtgcaaacgcgcgttcactaactatctgcccggtttcaacattcct
atgctgccgcgccacttgtcggacgatatttgctccctgcgcccgcaggaacgccgtccg
gtcatggcctgccgcgtcacgttggccgctgatggggcgatgagcgacattcagttcttt
gccgcctggatcgaatcccgcgccaaactggtctacgacgaagtgtccgactggctggag
caaaagggagagtggcagccagaaaacgaggctatcgcgactcagatccgcctgctgcac
aagatgtcgcagctgcgcagcgcatggcgcaccacgaacgcgctggtgttcaaagaccgc
ccggactatcgcttcctgctgggagaaaaaggcgaagtgctggatatcgtggtcgaaccg
cgccgcatcgcgaatcgtattgttgaagaagccatgatcgcggccaacgtctgtgcggct
atcgtactgcgcgaaaagctgggcttcgggatttacaacatccacaacgggttcgatccg
gtcacggtagaacaggccgtcgccattctggaaagcaatgagattcaggccgacccgcag
cagatactgacgctggaaggcttctgcgtgttgcgtcgccagttggacgccctgccgacg
cagttcctggatagccgcatgcgccgcttccagtcgtttgcggaaatcagcactgagccg
ggccctcatttcggtctgggattggaagcctacgccacctggacgtcacctatccgtaaa
tacggagatatggtgaaccatcgcctgttgaaagcgattatcaccggccagtccgctgag
aaaccgcgggatgaggtcaccgttcagctggcggaacgtcgtcgcctcaatcgtatggcc
gaacgcgacgtcagcgattggctgtacgctcgttatctgaagccgcatgctggcaccgac
gcacgcttcttggcagagatcatggacgttacgcgtggtggcctgcgagtgcgtctgctg
gacaacggcgcgacggcatttatcccggcctcgttcatccatgccgtccgcgacgagttg
gtctgcagtcaggacacgggcaccgtcaccatcaaaggtgaggtcgtctaccgccagagc
gataagctggatgtgatgctgaaggaagtgcgtctcgaaacgcgcagcatcatcgctaaa
ccggcggcctaa
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