Levilactobacillus brevis ATCC 367: LVIS_0505
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Entry
LVIS_0505 CDS
T00406
Name
(GenBank) Superfamily II DNA and RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lbr
Levilactobacillus brevis ATCC 367
Pathway
lbr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lbr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LVIS_0505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbr03019
]
LVIS_0505
03009 Ribosome biogenesis [BR:
lbr03009
]
LVIS_0505
Enzymes [BR:
lbr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LVIS_0505
Messenger RNA biogenesis [BR:
lbr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LVIS_0505
Ribosome biogenesis [BR:
lbr03009
]
Prokaryotic type
rRNA helicases
LVIS_0505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
AAA_30
CMS1
Helicase_RecD
AAA_19
CobA_CobO_BtuR
Motif
Other DBs
NCBI-ProteinID:
ABJ63663
UniProt:
Q03T09
LinkDB
All DBs
Position
539511..541082
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AA seq
523 aa
AA seq
DB search
MKFKELGLSEDLLKAITSVGYEEATPIQAETIPMVLAGQDVIGQAQTGTGKTAAFALPIL
EKIDKSNENVQALVVSPTRELAIQTQEEIYKLGRTERANVQVVYGGADIRRQIKSLKNHP
QVVVGTPGRLLDHIRRHTLKLDHVQMLVLDEADEMLNMGFLDDIEDIIKQLPEERQTMLF
SATMPPEIKRVGVQFMKDPKHVKIKAKELTTDLIDQFYVRSRDFEKFDVMTRFFDVQSPD
LTIVFTRTKRRVDEIASGLEARGYNAAGIHGDLTQKRRTQIMNDFRHGKLDILVATDVAA
RGIDINDVTHVYNYDIPQDPDSYVHRVGRTGRAGKHGVSMTFVTPNEMDYLREIEKLTKV
RMLPLKPPSDEEAFVSQLGAAKETIADLVNKADKEKYAKAAESLLNEYDAEDLVAALLSD
VTKDDNNQVPVKITPERPLPKRGGKRHGGGGYHHGGGNRRGGNGGGGYRGGHRSSDRHGN
DRGHGSRNHDSRNHSDNRSHRSNNGGGRRNEGGSRGFTIRKKD
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
ttgaagtttaaagaactgggtctctctgaagacctacttaaagcaattacgtcagtaggt
tacgaggaagcgaccccaattcaagccgagacaattccgatggttttagccggccaagat
gtgattggtcaggcacaaaccggtaccgggaagactgcggccttcgccttaccaattttg
gaaaaaattgataagagtaacgaaaatgttcaagcgctggttgtctcaccaacacgggaa
ttggctatccaaacccaagaagaaatttacaagttaggccggactgaacgggctaacgtg
caagttgtctatggtggcgctgatattcgtcgtcagattaaatccttaaagaatcacccg
caagtggttgttgggaccccgggtcggttattggatcatattcggcggcacacgttgaag
ttagaccacgtacaaatgttggtcttggacgaagccgatgaaatgttaaacatgggtttc
ttagacgatattgaagatattatcaaacaattgccagaagaacgtcaaacgatgctgttc
tctgcaacgatgccgcctgaaatcaaacgggttggtgtccaattcatgaaggaccctaag
catgtgaagatcaaggctaaggaattaaccacggacttgattgaccaattctacgtgcgt
tctcgtgatttcgaaaaatttgatgtcatgacgcggttctttgacgttcaatcaccagat
ttgacgatcgtctttacccggacaaaacggcgggtagatgaaattgccagtggtttggaa
gcccgcggctataacgctgctgggattcatggggatttgacgcagaagcgccggacccaa
atcatgaacgacttccgtcacggtaagttggatatcttagtggcaaccgatgttgctgcg
cgggggattgatattaacgatgtcacccacgtttataactacgatattccacaagatccc
gatagttatgttcaccgggttggccggactggccgtgccgggaagcatggggtttccatg
acgtttgtgacaccaaacgaaatggactacttgcgtgaaatcgaaaagctgacaaaggtg
cggatgttacctttgaagccaccttcggatgaagaagcgttcgtcagccaattgggtgct
gcgaaggaaaccattgctgacctggtcaacaaggcggataaggaaaagtatgctaaggca
gctgaaagcttgctaaacgaatacgatgccgaagacttagttgcggcgctcttgagtgat
gtcacgaaagatgacaataaccaagtacccgttaagatcacgccagaacgaccattgcct
aagcgcggtggcaaacgtcacggcggtggcggctaccatcatggcggtggcaatcgtcgc
ggcggtaatggcggtggcggttaccgtggtggacaccgttcttcagatcgtcatggtaat
gatcgtggccatggttcacgcaaccatgactcacgtaaccatagtgataaccggagtcac
cgaagcaacaatggcggtggtcggcgtaacgaaggtggtagccgcggcttcaccattcga
aagaaagactag
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