Levilactobacillus brevis ATCC 367: LVIS_0516
Help
Entry
LVIS_0516 CDS
T00406
Name
(GenBank) Transcription-repair coupling factor (superfamily II helicase)
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lbr
Levilactobacillus brevis ATCC 367
Pathway
lbr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lbr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LVIS_0516
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lbr03400
]
LVIS_0516
Enzymes [BR:
lbr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LVIS_0516
DNA repair and recombination proteins [BR:
lbr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LVIS_0516
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
MFD_D3
RecG_dom3_C
PTH2
UB2H
AAA_16
IstB_IS21
DUF4711
Motif
Other DBs
NCBI-ProteinID:
ABJ63674
UniProt:
Q03SZ8
LinkDB
All DBs
Position
549560..553102
Genome browser
AA seq
1180 aa
AA seq
DB search
MNLEAFMTQTAQYATIRQTLGVGQRQLVTGLNGSAETLFIASLLHEQQRSLVYVTDTLYH
ASQLVDDLANLLDDDELFDFPVEELLAAEVATSSPEYRSARIDALRALQSDRPVVVVTSL
SGLRRFLPTPANFAAARFTVSVGDEFDLEALQQKLFAMGYAHQKLVAAPGDFAVRGSIID
IYPLAADYPIRIDFFDTEVDSLRYFDPATQRSIDNGQTVEVLPATDFILTADERATGATA
LRTTLQAQAADLAAEDATTLTNQVQPLIDGLQKGSVDPQLLEFADYLFPEHHQVLDYLPD
DGVVLFGDYVRLQDAERQLLEDEANWATDKLAHHQIFTQQTFGGELRPIVRADKHAQIML
ALFQKGMGSLRFQAMTNMTTRAMQQFFGQLPVMKTEIDRWHKQQQTVVLLVQDEERLAKI
EQTLDDFEIQAVLTKSANLQPALTQLVPERLQTGFELPEASLVVITEAEMFQKVTKKRPR
RQTMANAERLKSYTDLKPGDYVVHVNHGIGKFIGMQTLTVDGVHQDYMTIDYQDNAQLFI
PVTQLNLIQKYVSSEDKKPKINKLGGSEWAKTKSKVAAKIEDIADELVDLYAKRSAEKGY
AFPVDDSLQHDFENDFPYAETPDQLRTIEEVKHDMEKPRPMDRLLVGDVGYGKTEVALRA
AFKAVEAGKQVAFLVPTTILAQQHYDTMVSRFEGYPINVEMFSRFRTTKQIHQAIKDLET
GQLDIVVGTHRLLSQDVKFKNLGLVLVDEEQRFGVKHKERLKQLKANVDVLTLTATPIPR
TLHMSMLGVRDLSVIETPPANRFPIQTYVMEQNAGAIQDGIRREMQRGGQVFYLHNRVDD
IEKTVGQIQVLVPEARVGYIHGKMTEAQLEGVLFDFLRGDYDVLVTTTIIETGIDIPNAN
TLFVENADRMGLSQLYQLRGRIGRSNRVAYAYFTYQPNKVLTEVSEKRLEAIKDFTELGS
GFKIAMRDLSIRGAGNLLGKQQHGFINSVGYDLYTQMLSDAVAKKRGQKTQPKTDTTIEL
GVEAYLPSDYIEDEQQKIEMYKRIRQLEDDDEVSEIQADLIDRFGEYPPAVDQLLTIGQL
KLAADLALVDKIRRVNGDVFVTVSKQGTEILGGEDVFKALAVTQLKATVGINDDRLHIKL
VLQPNMTTTDWLPQVQAFMVTLREIVEQTTKPKAAKATDK
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
gtgaatttagaagcatttatgacccagacggcgcaatacgcgaccatccgtcaaacgctt
ggggttggtcagcgtcaattagtgacgggacttaatggctcggcggagacgctatttatt
gccagtctgctccatgagcaacagcgatccctagtttatgtgacggataccctctatcac
gctagccagctcgtcgacgatctagccaatttgctagatgatgacgagctctttgacttt
cccgtggaggagttattggcggctgaggtagcgaccagttcgccagagtaccgctcagca
cgaattgatgccttgcgggctttacagagtgaccggccggtggttgtcgtaacctcgtta
tcgggattacggcggttcttacccacaccggcaaattttgcggccgcccgatttacagtt
agtgttggcgatgaatttgatttggaagccctccagcaaaagttgtttgcgatggggtat
gcgcatcagaaattagtagcggcacctggtgatttcgctgtccgggggtctattattgac
atctatccactagcggcggactatccgatccgaattgactttttcgataccgaagtggat
tcattacgctactttgatcccgccacccagcgaagtattgataatggacaaacggtcgag
gttttaccagccacggactttattttgaccgctgatgaacgggccactggagcgacggca
ctccggacaaccttacaagcccaagcggctgacttagcggcagaagatgcgaccacactg
accaatcaggttcaaccattgattgatgggttgcagaagggctcagttgatccacagtta
ttagaatttgcggactacttattccccgaacaccaccaagtgttggattatttaccagat
gacggtgtggttttattcggcgactacgtgcggctgcaagatgctgaacgacaattattg
gaggatgaagcgaactgggcgacggataaattagcccatcatcaaatctttacccagcag
acctttggcggtgaattgcggccaattgtccgggccgataagcatgcccagattatgttg
gcattgttccaaaagggcatggggagtttacggttccaagcgatgaccaatatgacgacg
cgagcgatgcaacagttctttggtcagttaccagtgatgaaaactgaaattgaccggtgg
cacaaacaacagcagacggtcgtattattggttcaagacgaggaacggcttgctaagatt
gaacaaacccttgatgactttgaaattcaagcggttttaaccaaatcggcaaacctccaa
ccagcactaacccagttagtaccagagcgactgcaaacgggatttgagttgcccgaagcc
tcattagttgtgattacggaagccgaaatgttccaaaaggtgaccaaaaaacgcccccga
cggcaaacgatggccaacgctgaacggttaaagagttatacggacctaaagcccggtgac
tacgttgttcacgttaaccatgggattgggaagtttattgggatgcagacgctgacggtt
gacggcgttcatcaggattacatgaccattgattaccaggataacgcgcaactattcatt
cccgttacccaactaaatctcattcagaagtatgtctcatccgaggataaaaagcccaag
attaacaagttgggcggttctgagtgggcgaagaccaagagtaaagtggccgctaaaatt
gaagacattgctgatgagttggtggacctgtatgccaaacgttcggctgagaagggctac
gcgttcccagtggatgatagcttacaacatgactttgaaaatgattttccatacgcagag
acgcctgaccagttacgaacgattgaagaggtcaagcatgatatggagaagccgcggcca
atggatcgcttgttggttggggatgtgggctacggcaagacggaagttgcgttacgggca
gcatttaaagccgttgaagccggtaaacaagtggcctttttagttccaacaaccatctta
gcgcaacaacattatgatacgatggtcagccgatttgaaggctatccaatcaatgtcgaa
atgttttcccgtttccgaacgactaagcagattcaccaggcgattaaagacttggaaacc
gggcaattggacattgttgtgggcactcaccggctcttatcacaagatgttaaattcaaa
aatttgggattggtgctggttgatgaggagcagcggttcggtgttaaacataaggaacgg
ttgaaacaacttaaggccaacgtcgatgtgctgaccttaacggcaacgccgattccccgg
acgctgcacatgtcgatgctgggggttcgtgacttgtctgtgattgagacacccccggct
aaccggttcccgattcaaacctacgtgatggaacaaaatgcgggggcgattcaggatgga
atccgccgggaaatgcagcgtggtggtcaagtgttttacctgcataatcgggtggatgac
atcgaaaagacagtgggacaaattcaggtgttggtgccagaagcgcgagtcggctacatt
catggtaagatgacggaagcgcaattagagggtgtgttgttcgactttctacggggggac
tatgatgtcttggtaaccaccaccatcattgaaactgggatcgacatccccaatgccaac
acactctttgttgaaaatgctgaccgcatgggcttgtcgcagttatatcaactgcgtggg
cggatcggtcgaagtaaccgcgtggcctatgcctactttacttaccagcccaataaggtg
ctgaccgaagtcagtgaaaagcggctagaggccattaaagactttaccgaattagggtcg
ggtttcaagattgcgatgcgagacctatccattcgtggcgcgggtaacttgttgggtaag
caacagcatggatttattaactccgtgggttatgatttgtacacgcagatgctcagtgat
gccgttgccaagaagcgaggacaaaagacacaaccgaagacggatacgaccattgagttg
ggggttgaagcctatcttccgagtgattacattgaggatgaacaacagaagattgagatg
tacaaacggattcgtcaattggaagatgacgatgaggtgagcgagattcaagcggacctg
attgaccggtttggggaatacccaccagcagtggatcagctcttgacaattggccaattg
aagttagccgcggatttggctttagtcgataaaattcggcgggtcaatggcgatgtattc
gtgacagtgtcgaaacaaggaacggaaatcttaggcggtgaagacgtctttaaggctttg
gcggttacgcaactgaaagctactgttggcattaatgatgatcggttgcacattaagttg
gtcttacagcccaatatgacgacaactgattggttaccgcaagtgcaagccttcatggtt
acgttacgtgagattgtggagcaaacgactaaacctaaggctgctaaggcaaccgataag
taa
DBGET
integrated database retrieval system
