Lactiplantibacillus brownii: MH1LPH_15980
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Entry
MH1LPH_15980 CDS
T10750
Symbol
rnj_2
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lbs Lactiplantibacillus brownii
Pathway
lbs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lbs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MH1LPH_15980 (rnj_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbs03019
]
MH1LPH_15980 (rnj_2)
Messenger RNA biogenesis [BR:
lbs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MH1LPH_15980 (rnj_2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
DUF4453
Motif
Other DBs
NCBI-ProteinID:
BDZ31132
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All DBs
Position
1742834..1744510
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AA seq
558 aa
AA seq
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MKRLNVKNNETAVFAVGGLGEIGKNTYGVQFQDEIILIDAGIKFPEDELLGIDYVIPDYS
YLVANQQKIKALVITHGHEDHIGGIPFLLQQLNVPIYAGPLALALIKGKLEEHGLLKTTE
LHEINEDTVLKFRKTRVSFFRTTHSIPDTLGIAVQTPPGTIVETGDYKFDLTPITNQPPN
LQRMAHLGERGVLALLSDSTNAERPIFTKSERWVAQSIRHIFEGIDGRIIFATFASNISR
IQEAAQVALEHHRKIAVFGRSMEGAIVNGRELGYLNIPDEAIVDANDIKSLPANKVMILC
TGSQGEPMAALSRIANGTHRQISVQPGDTVIFSSSPIPGNTLSVNHVINELEEAGAHVIH
GKVNNIHTSGHGGQEEQKLMLRLMKPKFFMPIHGEYRMLKIHTELAEQCGVPLDHSFILE
NGDVLALTKDSARVAGHFGAGDVYVDGSGIGDIGNVVLRDRQVLSEEGLVVVVATIDLKK
KEIQAGPDILSRGFVYMRESGDLINEARRHVFRTIRRKMKSDKASEATIRNAIIDDLQSF
LFDKTERHPMILPMLIMN
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggttaaacgtcaaaaataacgaaaccgctgtttttgcagtcggcggtttgggt
gaaattgggaaaaacacttatggtgtccaatttcaggacgagattattctgattgatgct
ggtatcaagttccctgaagatgaattactcggaattgattacgtcatcccagattattct
tatctagttgcaaatcagcaaaaaataaaagcattggtgattacgcacggacacgaagat
cacattggtgggattccattcctactccaacaactcaacgtgccgatttatgccggtccc
ctagccttagccttaatcaagggtaagctggaagaacatgggctcttaaaaaccacagag
ttacacgaaatcaacgaagacacggtgttgaaatttcgtaagactcgggtttcattcttt
agaacgacccattccattccagatacgttagggatcgccgtccaaacaccacctggtacc
attgtggaaaccggggattataagttcgacctgacaccaattacgaatcagccaccgaac
ttgcaacggatggcacaccttggtgaacgtggtgtgttggcgttgctatctgatagtacc
aacgccgaacggccaattttcacgaaatcagaacgttgggttgcccaatcaattcgtcat
atttttgaaggaatcgatggtcggatcattttcgccaccttcgcttcaaatatctctcga
attcaagaagccgcccaagttgcgttggaacaccatcgtaaaattgccgtcttcggtcgt
agtatggaaggtgccattgtcaatggccgtgagctgggatacttaaacattccagatgaa
gcgatcgttgatgccaatgatattaaatcattgccagcgaataaagtcatgatcttatgt
acgggttcgcaaggtgaacccatggcggccctttcacggattgccaacgggacccatcgc
cagatttctgttcaacctggtgacacggtcatcttctctagctcgccgattcctggtaac
actttgagtgttaaccatgtgatcaacgaacttgaagaagccggtgcccatgtgatccat
gggaaagtcaataacattcatacttctggtcatggtggccaagaagaacaaaaattgatg
cttcgcttaatgaagcccaagttcttcatgcctattcatggggaatatcggatgttaaag
attcacaccgaattggccgaacaatgtggtgtcccacttgatcatagctttatcttggaa
aacggtgatgtcttagccttaaccaaggattcagcacgagtggctggtcattttggtgct
ggcgatgtttatgtcgatggctctggcattggcgacattggtaacgtggtgttacgtgac
cgtcaagttctttcagaagaaggcttggtcgttgtcgttgccacaattgatcttaagaaa
aaagaaattcaagccggaccagacatcctttcacgtggcttcgtctatatgcgtgaatct
ggtgatttaatcaatgaagcgcggcggcacgtcttccgcacgattcgtcgcaagatgaag
agtgataaggccagtgaagcgacgattcgcaatgcgattatcgacgacttacaaagtttc
ttgtttgacaagactgaacggcatccgatgattttaccgatgctaatcatgaattaa
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