Loigolactobacillus backii: AYR52_07935
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Entry
AYR52_07935 CDS
T04754
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lbt
Loigolactobacillus backii
Pathway
lbt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lbt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AYR52_07935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbt03019
]
AYR52_07935
03400 DNA repair and recombination proteins [BR:
lbt03400
]
AYR52_07935
Enzymes [BR:
lbt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AYR52_07935
Messenger RNA biogenesis [BR:
lbt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AYR52_07935
DNA repair and recombination proteins [BR:
lbt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AYR52_07935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
ANK60179
LinkDB
All DBs
Position
complement(1683480..1685282)
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AA seq
600 aa
AA seq
DB search
MQLTAATLLKTKFGYDHFRRGQKTAIDKVLAGENSLALMPTGGGKSLCYQIPALLLPGIT
LVISPLISLMKDQVDALHENDIPATFINSTLDYAEINEHLRLAASGEVKLLYLAPERLDS
SSFLAELGQLNISLIAVDEAHCISQWGHDFRPSYLNLTTSLAQLPSQPPIIALTATATIQ
VADDICRRLEIPTENVIRTGFARDNLAFQVIKNQDRDRFLLDYLKLNHDQSGIIYASTRK
EVQRLVHLLQQHKIKATQYHGGLSEQERRQNQEDFLYDRVQVMVATNAFGMGIDKSNVRF
VIHAQVPGSLEAYYQEAGRAGRDGLPSEAILIFRAQDTQIQHFFIDQSEMDDEHKQKEYR
KLQEMAQYANTQTCLQQFILRYFGDEPGEPCGRCSNCLDKREEQDITVDTQKVLSCVIRM
HERFGKAVIAQVLTGANTLRVRQQHFQELSTYGLLKRQSQKKVIGLIDFLTAAGFLRVSG
GKFPLVQVTAAGEQVLRGKQQVLRKTAVKAQQSLPEDDELFQKLRQLRRELAEKQQVPPF
VIFSDKTLHALAGELPTNLTEMLEVKGIGQSKLDKYGQQFLDAINTATTQKKIRGQFLRP
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgcaactaacagcagcgacccttttgaaaacaaaatttggttatgatcattttcgccgc
gggcaaaagacagcaattgataaggtacttgctggtgaaaatagcttagcgttaatgccg
actggtggtggtaaatcactgtgctaccaaataccggccttattgctgccgggtatcact
ttagtaatctcgccactgatttcgctaatgaaggaccaagtggatgccttacacgaaaat
gatattccagcgacttttattaatagtactttggattatgccgaaattaatgagcatttg
cggttggctgctagtggtgaggtcaagctgctctacttagcaccagaacggttagattca
agctcttttttggccgaacttggtcaacttaatatttcattaattgcagttgatgaggcc
cactgtatttcgcagtggggccacgattttcgccctagttacttaaacttaacgactagt
ttggcgcaactaccaagtcagccaccgattatagccttgacggccaccgccaccatccaa
gtcgcagacgatatttgtcggcgtttagaaattccgaccgaaaatgttattcgaactggt
tttgctcgggataatctggccttccaggtgattaagaatcaagaccgtgatcgttttttg
ttagactatttgaagttgaatcatgatcagtccggaattatttatgcgagtacccgtaaa
gaggtgcaacgcttggtccacttactacaacagcataaaattaaagcaacgcagtatcat
ggaggcttatcagagcaagaacggcgccagaaccaagaggactttttgtatgatcgcgtt
caggtaatggtggcaactaacgcttttggcatggggatagataaaagtaacgtccgcttt
gtgattcacgcccaggtaccaggaagtttagaggcttattatcaagaggctggccgggcc
gggcgtgatggcctacccagtgaggcaattctaatctttagagcgcaggacacacaaatc
cagcattttttcattgatcagtcagaaatggacgatgaacataaacaaaaggagtaccgc
aagctacaggaaatggcgcagtacgccaatacgcagacctgcttacaacagtttatttta
cgttattttggggatgagcctggcgagccgtgcgggcgttgcagcaattgcctggataaa
cgagaagagcaagatatcactgttgatacacaaaaggtattatcctgtgtgattcgaatg
cacgagcgtttcggtaaagcagtaattgcgcaagttttaactggtgctaatacgttgcgt
gttcgacagcagcattttcaagaactctctacttatggattattaaaacggcagtcacag
aaaaaagtgattgggttaattgattttttaacggcggcgggttttctgagggttagtggt
ggaaaatttccactagttcaggtgacagcagcgggcgagcaagtgttacgtggaaagcag
caagtgttacgtaagacagcagtaaaagcacagcaatccttacccgaggatgatgagcta
tttcagaaattacgtcagttacggcgcgagttagccgaaaagcaacaagttcccccgttc
gttattttttcagataagacacttcatgctctagcaggtgagctaccaactaatttaacc
gaaatgttagaagtcaaggggattggtcaaagcaagctagacaagtacgggcaacagttt
cttgatgcgattaatactgcaacgacacaaaaaaagattagggggcaatttttgcgaccg
taa
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