Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365: LBUL_0313
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Entry
LBUL_0313 CDS
T00419
Name
(GenBank) Superfamily II DNA and RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lbu
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
Pathway
lbu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lbu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LBUL_0313
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbu03019
]
LBUL_0313
03009 Ribosome biogenesis [BR:
lbu03009
]
LBUL_0313
Enzymes [BR:
lbu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LBUL_0313
Messenger RNA biogenesis [BR:
lbu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LBUL_0313
Ribosome biogenesis [BR:
lbu03009
]
Prokaryotic type
rRNA helicases
LBUL_0313
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ABJ57975
LinkDB
All DBs
Position
301052..302503
Genome browser
AA seq
483 aa
AA seq
DB search
MKFTELGLNDNILKAIKRSGFEEATPIQAQTIPLALAGQDVIGQAQTGTGKTAAFGLPIL
QKLDLDKQEQAIQAIVIEPTRELAIQTQEELFRLGRDEKAKVQVVYGGADIGRQIRDLKK
VPEILVGTPGRLLDHLKRKTIKLDGVKTVVLDEADEMLDMGFIQDIESILTYAENRDQTL
LFSATMPKPIQALGEKFMHDPQVVKIQAKQLTADLIDQYFVRVRENEKFDTMCRLIDVEN
PDLAVVFGRTKRRVDELTRGLVARGYNAAGIHGDLTQARRMQVLKRFKEGELDILVATDV
AARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGKSGMSVTFVTPNEIGYMRTIEDLT
KKKMSPLRPPTDAQAFAGQMKQAVLKVDDLLSGDLSKYDDAAEKLLENYSAEDIAAALLK
ELSNDSEVKVTITPENPHPYRGKHSGGRGRGSRSRSGNKNFKGKRNFDRKKRKPGFKIHG
RKG
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatttactgaactaggattgaacgacaatatcttaaaggcaattaagcggtcaggc
tttgaagaagccaccccgatccaggcccagaccattcctttggctctggcaggccaggac
gtgatcggccaggcccaaaccgggacggggaagacagctgcctttggtctgccaatcctg
caaaagctggacctggacaagcaggagcaagccatccaggccatcgtaattgaaccaacc
agagaactggccatccagacccaggaagaacttttccgcctgggcagagacgaaaaggcc
aaggtccaggtcgtttacggcggggcggacattggccggcagatccgggacttgaagaag
gtgccggaaatcctggtcgggactcctggccggcttttggaccacttgaagcgcaagacc
atcaagctggacggcgtcaagacagttgttttggacgaagccgacgaaatgctggacatg
ggcttcatccaggatatcgaaagcatcttaacctatgctgaaaaccgggaccagaccctc
ttgttcagcgcgaccatgccaaagccaatccaggctttgggcgaaaagttcatgcatgac
ccgcaagtcgtgaagatccaggccaagcaactgacggctgatttgatcgaccagtacttc
gtccgcgtccgggaaaacgaaaagttcgacaccatgtgccggctgatcgacgtggaaaat
ccggacctggccgtggtctttggccggaccaagcgccgggttgacgaactgacccggggc
ctggttgcccggggctacaacgcggccggcatccacggcgacctgacccaggcccggcgg
atgcaggtgctcaagcgcttcaaggaaggagagcttgacattctggtggctactgacgtg
gctgcccggggcctggacatttccggggttacccatgtttacaactacgacattccgcaa
gacccggactcctacgtccacagaatcggccggaccggccgggccggcaagagcgggatg
agcgtgaccttcgtgacgccaaacgagatcggctacatgcggactatcgaggacttgacc
aagaagaagatgtctcctctgcgtccgccgacagacgcccaggcctttgccgggcagatg
aagcaggcggtcttgaaggtggacgacctgttgagcggggatttgagcaagtatgacgac
gcggcggaaaagctgctggaaaattactcagctgaagacatcgccgctgctttgctgaag
gaactctctaacgacagcgaggtcaaggttaccatcacccctgaaaaccctcacccttac
cggggcaagcactcaggcggccgcggccggggtagccgcagccggagcggtaacaagaac
ttcaagggcaagcgcaattttgacagaaagaagcgcaagccaggctttaagatccacggc
cggaagggctaa
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