Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365: LBUL_0707
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Entry
LBUL_0707 CDS
T00419
Name
(GenBank) Predicted hydrolase of the metallo-beta-lactamase superfamily
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lbu
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
Pathway
lbu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lbu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LBUL_0707
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbu03019
]
LBUL_0707
Messenger RNA biogenesis [BR:
lbu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LBUL_0707
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Regulator_TrmB
Motif
Other DBs
NCBI-ProteinID:
ABJ58333
LinkDB
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Position
658747..660591
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AA seq
614 aa
AA seq
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MSDKLKIMVLGGVREQGKNMFAVQVNDEIFVLDAGLKYPDSSLFGIDVVIPDMEFFKQYG
DQVVGIFLTHGHADSIGALPYILRDWDIPVFGSKLTIELAKIDVQRENKRRNNQLFNVID
ADTEIDFKNTSVSFFHTTHSVPDSLGIVIHAPQGQIVYTGDFKFDPSARPAYRTDMARLA
EIAGNGVLALLPDSSNAEAVLPNASENEVGTYITNVFRNAKGRIIVAGKASNLNRVQQVF
NAAAATGRRVLLTGRDVAKIVHTAMKLGYLEVPDGLLMKAKELKDVPDEKTVILETGRMG
EPLQSLQKMANNRHRMITIHEGDLVFIATTPSHAVETTVAITSDMVYRAGGTVIELGRNM
HTSGHATGRDLQTLIDLLKPRILVPVIGDYRLLEAVKDLAVETGMDPDDVYITQNGDCLE
YDTKRGQFFRGDAVPGEDTMIDGSGVGDVGNIVLRDREVLSDDGIFIAVVTIDRKKKKIV
SEPQVTSRGFVYINANHKLMNDSIQVIKDAIQANFEHKKFDWTELKQDMRSSLGKFLYKQ
TNRRPVVLPVVMEVNQNRHRAMQKKAEDAAEGNKEKPVKKNNCKKQTRPANKSAKGKKPV
NKNKKKDSKADDKR
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacaagttaaaaataatggttctaggcggggtccgcgagcagggcaagaacatg
tttgccgttcaggtgaacgatgaaatctttgttttggacgccggcctcaagtacccggac
agttcattgttcgggatcgatgtggtaattccggacatggaattcttcaagcaatacggc
gaccaagtggtggggatctttttgactcacggccatgctgactccatcggggccctgcca
tacattttgcgggactgggatattccggtttttggttcaaaactcaccattgaactggcc
aagatcgacgtgcaaagagaaaacaagcggcggaacaaccagctgttcaacgtcatcgac
gccgatacggaaatcgacttcaagaataccagcgtgtccttcttccacaccactcactca
gtgccagactctttggggatcgtcatccatgctccccaagggcagatcgtctataccggt
gactttaagtttgatccgtcagcccggccagcttaccgcactgacatggcccggctcgct
gaaatcgcgggaaacggcgttttggcccttttgccagactcatccaatgctgaggctgtt
ttaccgaatgccagcgaaaatgaagtcggcacttacatcaccaatgtcttcagaaacgcc
aagggccggatcatcgtggccggcaaggcttccaacctaaaccgggtccagcaggtcttt
aacgccgctgctgctaccggccgccgggtccttttgactggccgggacgtggctaagata
gtccacacggccatgaagctgggctatctggaagtgccagacgggcttttgatgaaggcc
aaggaactcaaggacgtgccggatgaaaagacggtcatcctggaaaccggccggatgggt
gaaccgctccagtccctgcagaagatggccaataaccgccaccggatgattaccatccac
gaaggggacctggtctttattgccacgactccgtctcacgccgttgaaaccacggtggct
atcaccagtgacatggtttaccgggcaggcggcacggttatcgaacttggccgcaacatg
cacacttccggccacgcgactggccgggacctgcagaccttgattgacctcttgaagccg
cggattctggtaccggtcatcggggactaccggcttttagaagcagtcaaggacttagcc
gttgaaactgggatggacccggacgatgtctatattacccaaaacggggactgcctagaa
tacgacactaagcgcggccagttctttcgtggggatgccgtgccgggtgaagacacgatg
atcgatggctccggggtaggtgacgtgggcaacattgttttgcgcgaccgggaagttttg
tcagatgacgggatcttcatcgcggtagtgacgattgaccgcaagaagaagaagatcgtg
tctgaaccgcaagtcaccagccggggctttgtatacatcaatgccaaccacaagctgatg
aatgactctatccaggtcatcaaggacgctatccaggccaactttgagcacaagaagttt
gactggactgaactcaagcaagacatgcgctccagcctggggaagttcctttacaagcag
accaaccgccggccggtcgttttgccagttgtcatggaagtcaaccagaaccggcaccgg
gcaatgcagaagaaggccgaagacgcggctgaaggcaacaaggaaaagccggttaagaag
aacaactgcaagaagcagaccaggccggcaaacaagtccgctaagggcaagaagccggta
aacaagaataagaagaaggacagcaaggcagatgacaagcgttag
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