Lentisphaerota bacterium zth2: JYG24_04175
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Entry
JYG24_04175 CDS
T10935
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
lbv Lentisphaerota bacterium zth2
Pathway
lbv03410
Base excision repair
lbv03430
Mismatch repair
lbv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lbv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
JYG24_04175 (recJ)
03430 Mismatch repair
JYG24_04175 (recJ)
03440 Homologous recombination
JYG24_04175 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lbv03400
]
JYG24_04175 (recJ)
DNA repair and recombination proteins [BR:
lbv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
JYG24_04175 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
JYG24_04175 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JYG24_04175 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
QSH42076
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All DBs
Position
1025132..1026847
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AA seq
571 aa
AA seq
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MARKKWRSACLNLENKIDAFVRKYSFPRPVAMYFASRGIEGSKVADFLNPRLAGLSDPYR
FPGIKVAAKRLWDAVMSREPVLIHGDYDTDGITATALLSLVLRQNGCNVHSFIPHRFDDG
YGFTPESLHKATSSMPQPCKVLVTVDCGITSCEAVTEANKMGIDTIITDHHEAGPELPEA
LSIVNPKVNDELEDLQVLAGAGVAFKLCHAFIKYGRQENLGGFTTRLEEVLDFVALGTVA
DIVPLLGENRILVKYGIEVLRKQFRPGIRALIESSKIKTELKPSDITFKLAPRINAAGRV
GDANTALDLLESDNIVEAYKFSAHLEEFNAIRQQKEQEIYQEAREQIETSIDLDKRYSIL
VAGEDWHQGVIGIVASRIARDYNRPTIVLTIKDGKAYGSGRSVGTLNLVEVLYKSSDLLE
RFGGHPMAVGIGMKAEVIEEFYSSMEVSIKEQLSDADLEDYTSFDGEVQLEELDDDFFKY
LKHLGPFGHSNPKPVYRFNDLELVKSFPIGKRHTRGVLRNRSNHQIEFIAFNFEHSKFQN
SAMDILAMPQVNTYYNLERPQLQIIDLQALY
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atggccagaaaaaaatggaggtcggcctgcttaaatttagaaaataagatcgatgctttt
gtacggaaatactcatttccgcgcccagtcgctatgtattttgcttcacgcggcatagag
ggcagcaaagttgctgattttttaaatcccaggctggctggtttaagtgatccttaccgt
ttccccggaattaaggttgccgctaaacgtttatgggacgcagtgatgagccgcgaaccc
gttctcattcatggcgactatgatactgacgggattacagctactgctttgctttcactg
gtattaagacaaaacggctgcaatgtacattcatttattccccaccgttttgacgatggt
tacggttttactccggaatcactccataaagcgacgtcatctatgccacagccctgcaaa
gtgctggtaacggtcgactgcggcatcaccagctgcgaagccgttactgaagccaataag
atgggcatagacaccattataacggaccaccatgaagctggtcctgagctgcctgaagcg
ctgtctattgtaaaccccaaagtgaatgatgagctggaagacctgcaggtactggctggt
gccggtgtcgcattcaaactttgtcatgcatttataaaatacggcagacaggaaaatctg
ggcggctttacaacccggcttgaggaagttctggactttgtcgctctgggaactgtagct
gacattgtgccgctgcttggagaaaaccgtattctggtaaaatacggaattgaagtactg
cgtaagcagttcagaccaggaatccgggcactcattgaaagctcaaaaataaaaactgaa
ctcaagccctctgatattacatttaagctggctcccagaatcaatgctgccggccgggtt
ggagatgcaaatacagcactcgatctgcttgagtcagacaatatagtggaagcatataaa
ttctcagctcatcttgaagaattcaatgcgatacgccaacaaaaagagcaggagatttac
caggaagccagagaacagatagaaacctcaattgaccttgacaagcgttattcaatcctg
gtggctggagaagactggcaccagggagtaataggaattgtcgcatcaagaattgcaagg
gattacaacaggccaactattgttctgacaatcaaggacggcaaggcatacggttccggc
cgaagcgtcgggaccttgaatctggttgaagttctttataaatcttcagatttacttgaa
cgttttggcggacatccaatggccgtcgggatcggcatgaaagctgaagtgattgaagag
ttctacagcagtatggaagtcagcataaaagagcagctttccgacgcagatttagaggac
tacaccagctttgacggtgaagtgcagctcgaagagcttgacgatgactttttcaaatac
ctcaagcatctcggaccgttcgggcacagcaatcccaagccggtataccgattcaatgac
ctggaactggtcaagagttttccgatcggcaagcgccacactcgcggggtcttgcgcaac
cggagcaaccaccagatagagttcattgcttttaattttgagcattcaaagtttcaaaac
agcgccatggatattttagccatgccgcaagtaaatacttactataatctggaacggccg
caactgcagataattgacttgcaggcattgtactaa
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