Lentisphaerota bacterium zth2: JYG24_06475
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Entry
JYG24_06475 CDS
T10935
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lbv Lentisphaerota bacterium zth2
Pathway
lbv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lbv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JYG24_06475 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lbv03400
]
JYG24_06475 (mfd)
Enzymes [BR:
lbv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JYG24_06475 (mfd)
DNA repair and recombination proteins [BR:
lbv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JYG24_06475 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
QSH42511
UniProt:
A0A974WYD3
LinkDB
All DBs
Position
complement(1560341..1563577)
Genome browser
AA seq
1078 aa
AA seq
DB search
MDWQKKIKKWLCSADCLPDAIENVYADALAPMILRRACSGTGPTLVVLPVLTQADRLQAD
IALWQQELELPLRWLYLPETHDGQNLMPGNEAQRARALHRVLSEDFDLIIGSVASLLSTV
PAPEKIKESQLCLRRGCSTSFNDLLEALVTLDYDDEFEVNVECEFSRRGGIIDVYSPAHN
FPARIEFWGDEVDSIRSFDPETQRSTGALQEYLIIGRGGIDDEEAGVDFFTFTESKISSL
SIVFPEACFSHLEKFSDEAEIERFRELLNMKSYHVARYFDPGEVSSGDAVPAACFPAAAH
LKQGLPAEAADGGMELLRQLIARQLSQWLDTGYEVLLFGNDPGAEVHIKTWCKEHEVASD
RVTVASGKLPAGILFPAEKTVFITERELFTANYFRKKSALPPAPEERRALTEQEVAACAD
LDEGDYAVHLIHGIGIFKGIKEMELRGVKREVMVLEYRDNAQLYVPLYQAAMVSRYIGAQ
AKVKLHKLGDKRWLAAKAGTARAIKDFAAELLRFQAVRNASEGIKYPADGLEQRIFEDAF
PFKETPDQAKAVNEVKADMCASRPMDRLLCGDVGYGKTEVAIRTAFKAVEAGYQAAVLVP
TTVLAQQHYYSFKERFAEYPYTIEMLSRFRSRQQQSEIVRKIRSGGIDVIIGTHRLFQDD
VHFKKLGLVVIDEEQRFGVKHKEKIKRFRTAVDVLTMSATPIPRTLYMAMAGARDLSTIM
TAPGLRLPVKTIISQYDDKFICEAVRNEVKRGGQVFFIHNRVKTINSTAEKLMKLMPEVR
IGVGHGQMAEGDLETVMADFLRGEIDVLLCTTIIESGLDIPNANTIIIERADRFGLAELY
QLRGRVGRWSRQAYAYLLLPKSNIISSDARKRLGAIRRYTHLGAGFRLALRDLEIRGAGN
LLGAQQSGHVNAVGFDLYCQLLRSEVSRMQGAPQRFLPEVDVNIDFLYFAHAAPREALAA
GFPPDYIPSQRLRVDAYRRVSAMTSEEELDAFREEMEDRYGTLPEEAEVLCELMLIRILV
ALHGYSYVGVQQEKVFIKDSRRTFRRNGMLPLVNSENPPRCRLRNLLDIVRLMPDKSD
NT seq
3237 nt
NT seq
+upstream
nt +downstream
nt
atggattggcaaaaaaaaataaaaaaatggttatgttcagctgactgcttgcctgatgct
atagaaaatgtctatgctgatgctctggctccaatgattctgcgccgcgcatgttccggg
accgggccgacgctggttgtgctgcctgttttgacccaggcggatcggcttcaggcagat
attgctttatggcagcaggaactggagttgccgttgcgctggctgtacttgccagaaact
catgatggtcagaatttaatgcctggcaatgaagcgcagcgggcaagggctctgcataga
gttttgagcgaagatttcgatttgataatcggcagtgtcgcttcgttgctgtcgactgtg
ccggcgcctgaaaaaataaaagagagtcagttgtgcctgcgtcgcggctgcagtacttct
ttcaacgacctgcttgaagccttggtaacactggattatgatgatgaattcgaggtaaat
gttgaatgtgaattttcacgtcgtggcggcattattgatgtttactccccggcgcataat
tttccggcaagaattgagttctggggagacgaggttgattctatccggagctttgatccc
gaaactcagcgctcaaccggtgcgcttcaggaatatttaattattggtcgcggcggtatt
gatgatgaggaggccggcgttgacttttttacatttactgaaagcaaaatttccagcctt
tccatagtctttcctgaagcttgtttcagtcacctggaaaaattctctgatgaagctgaa
attgagcgttttcgagagctgcttaatatgaaatcttatcatgtagcgcgctattttgat
cccggagaagtgtcttccggcgacgcggtcccggcggcatgtttcccggcagcggcacat
ttaaaacagggattgccggcagaggctgctgacggcggtatggaactgttacggcagctt
attgcgagacagctcagccaatggcttgatactggatatgaagtgttgttgtttggcaat
gaccccggagcggaagtgcatattaagacctggtgtaaagagcacgaagttgcctcggac
agggtcactgtagcatctgggaagctgccggcaggtatactctttccagcagagaaaacg
gtttttattacagaacgtgaactttttaccgcaaattatttccgcaaaaaatctgcattg
ccgccggcgcctgaagagcggcgggcgctgacggagcaggaagtggcggcctgtgctgac
cttgatgaaggagattatgccgtgcacctaattcatggcattggcattttcaaaggtata
aaggaaatggagcttcggggagtaaagcgtgaggtcatggtgcttgaataccgggataat
gcccagctttatgtgccattgtatcaggctgccatggtcagccggtatatcggagctcag
gctaaggtaaagctgcataagcttggtgacaaacgctggctggcggccaaagcgggtacc
gcgcgggctattaaggattttgctgctgaactactgcgctttcaagcggtacgcaatgca
tcagagggaataaagtaccctgctgacgggctggaacagcgtatttttgaagacgctttc
ccttttaaggagactccggaccaggcaaaagcggtaaacgaggtaaaggctgacatgtgt
gcttcaaggcctatggatcgtttattgtgcggggatgtcggctacggcaagacggaagtt
gcgatcaggaccgcattcaaggcggtagaggccgggtatcaggctgcggtgctggtgccg
actacagtgcttgcacagcagcattattacagctttaaggagcgttttgccgaatatcct
tataccatagaaatgttgtcgcgttttcgttcaagacagcagcagtcggaaattgtcaga
aaaatacgctctggcggaattgatgttattatcggaacacatcgcctttttcaggatgat
gtacatttcaaaaagctcgggctggtagttattgatgaagagcagcgttttggcgtcaag
cacaaagagaagattaaacgcttcagaaccgcggtggatgttttgaccatgtccgccact
cctattcccaggactctgtatatggcaatggccggggctcgggacctgagcacgataatg
accgctccgggactgcggctgccggttaaaaccataatctcacagtatgacgataaattt
atctgtgaagccgtccgcaatgaggttaaacggggcgggcaggtattttttattcacaac
cgggtcaaaaccataaacagtaccgctgaaaaactgatgaagttaatgccggaagttcga
atcggtgtcgggcacggacagatggcggaaggtgatcttgaaacggtaatggctgatttt
ttgcgtggagagattgacgttcttttatgtacaacaataattgaatcagggttggacatc
ccaaatgctaacaccattataatagagcgagccgatcgtttcgggctggccgaactgtat
cagctgcgaggccgggtcggacgctggagtcgtcaggcttatgcctatttgctgctgccg
aaaagtaacattatcagttctgatgccagaaagcggcttggggcaattcgtcgctacact
cacctcggtgccggcttccggctggctttgcgggatctggaaatacggggagcggggaat
ctgctgggtgcgcagcagagcgggcatgtgaatgcggtcgggtttgatctttattgtcag
ctgctcaggtcagaagtcagcaggatgcagggagcaccccagaggtttttgccggaggtt
gatgttaacattgattttctgtacttcgcgcatgcggcgcccagggaggctttggctgcg
gggttcccacctgactatattccctcgcagcgtctccgggtggacgcctaccgccgggtg
agtgccatgacatcagaagaagagctggacgcttttcgtgaagaaatggaagatcgctat
ggtactttgccggaggaggctgaggtgctgtgcgagttaatgctcattcggatactggta
gctctgcatggttacagttatgtgggagtgcagcaggaaaaagtttttataaaagattca
cgtaggacttttcgacgtaatggtatgctgccgctggtgaactctgagaacccgccgcgc
tgccgcttgcgtaatttgctggatattgtcagactaatgccggataaaagtgattga
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