Lachnospiraceae bacterium oral taxon 500: C3V36_04120
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Entry
C3V36_04120 CDS
T05749
Name
(GenBank) hydrolase
KO
K03698
3'-5' exoribonuclease [EC:3.1.-.-]
Organism
lbw
Lachnospiraceae bacterium oral taxon 500
Brite
KEGG Orthology (KO) [BR:
lbw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbw03019
]
C3V36_04120
Messenger RNA biogenesis [BR:
lbw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C3V36_04120
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Gene cluster
GFIT
Motif
Pfam:
HD
tRNA_anti-codon
Vmethyltransf
HDOD
Cas3_HD
TraI_2
CDC24_OB3
Motif
Other DBs
NCBI-ProteinID:
AVM70432
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All DBs
Position
complement(878544..879500)
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AA seq
318 aa
AA seq
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MIYLAEVKEGERIQEVYLCVTKQVLKTRAGKTYYSMTLQDKSGSIDAKIWDLTDAVGHFE
AGDFIKIDGSVVSFQNANQLNVKRVRRSEPGEYDPANYIPTTKQNPEEMYRQLLGYVSSL
KNSYIRALAEELFVKDTDFVGRFKKHTAAKTVHHNFQGGLLEHTLGILKICDFLAGQYPV
LDRDVLLMGALLHDIGKMQELSEFPLVDYTDEGNLIGHIVIGVERMNEKIRQIPGFPADL
ANILRHMVLAHHGELEYGSPKRPAIIEAMVLHYADNIDAKIMTFQTLLAESENEDTWIGY
SKLFDSMLRRTRYKSQEK
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
atgatttatttagcagaagtaaaagagggtgagcgtattcaggaggtttatttgtgcgta
accaagcaagtgctgaaaacgcgggcgggaaagacgtattattcgatgactttgcaggat
aaaagcggcagcattgatgccaaaatttgggatttgacggatgcagtcgggcattttgag
gcgggggattttatcaaaatcgacggttcggtggtcagctttcaaaatgccaatcagctc
aatgtaaagcgggttcgccgcagtgaaccgggcgagtatgacccggccaattatattccg
accaccaagcaaaatcccgaggaaatgtaccggcagcttttgggctatgtcagcagcttg
aaaaattcctatattcgggcgctggcggaggagctttttgttaaggacacagattttgtg
gggcgctttaaaaagcatacggcagccaaaacggtgcatcataattttcaggggggactg
ctggagcatactttggggattcttaagatttgcgattttctggccgggcagtatccggtg
ctggatcgggatgttttgctgatgggtgcgctgctgcacgatattggaaaaatgcaggaa
ttatcggagtttccgctggttgattataccgatgagggcaatttgattggacatattgta
atcggtgttgagcggatgaatgagaagattcggcaaatcccgggttttccggcggatttg
gccaatattttgcgccatatggttttggcacatcacggagaattggagtatggctcaccg
aaacggccggccattatcgaagcaatggtcctgcactatgcggacaatattgacgcgaag
attatgactttccagacattgctggccgagagtgaaaacgaggatacctggattggttat
tccaagctgtttgacagtatgctgcgccgcaccagatacaaaagccaggaaaaataa
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