Lachnospiraceae bacterium oral taxon 500: C3V36_08500
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Entry
C3V36_08500 CDS
T05749
Name
(GenBank) hypothetical protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lbw
Lachnospiraceae bacterium oral taxon 500
Pathway
lbw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lbw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C3V36_08500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbw03019
]
C3V36_08500
03009 Ribosome biogenesis [BR:
lbw03009
]
C3V36_08500
Enzymes [BR:
lbw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C3V36_08500
Messenger RNA biogenesis [BR:
lbw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C3V36_08500
Ribosome biogenesis [BR:
lbw03009
]
Prokaryotic type
rRNA helicases
C3V36_08500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
UTP25_NTPase-like
CMS1
RecX_HTH1
RepB_primase_C
SelB_WHD3
Motif
Other DBs
NCBI-ProteinID:
AVM69277
UniProt:
A0A2R3N0G6
LinkDB
All DBs
Position
1850303..1852102
Genome browser
AA seq
599 aa
AA seq
DB search
MGQAMKFHELVTNPKLLRAIKEMGYEEATPIQEAVIPMIAGGGDVIARSQTGTGKTAAFS
IPVLDKIDENLSRPQVLILCPTRELAVQVAGEIRKLLSFSHNIKVLPVYGGEPIYKQIMA
LKKGVQVIVGTPGRIMDHMERKTLRFSEVHTVILDEADEMLKMGFREDIEFILTAVPAEV
QKLLFSATMPAEIIELAGKYLKEPGEVKIEASGITTDTVLQSYCAVKKELKPEALFRILD
DKSPERCMVFCNTKKMVDEITDALQERGFWGDKIHGDLKQELRMGVLEKFNKGILHILVC
TDVAARGLDIQNVDLVVNYDVPDKEEYYVHRIGRSGRAGKAGESITIVTRPDRIRFRNVE
IYIQKKIERMEIPSRVEVREKQITRFTENLLSNMETELLYDYEEMVEKLQAKGYSAKQIA
AALLRQTLAVEAADEERDVNDYRFDAPKRERSVPERGRERGKERERSKDGGAERKRERAE
KPAGSERRERPFEERSKHGKRKGKPEEVFFERGKRKGKAVAEQVRLFLSAGKKHKVSVGD
VVGAIVGEAGIDAAHIGTIDMYDKFSFVDVSKESAKKVLNSLQNKRIKGRKLNVEIAKG
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atggggcaagctatgaaatttcatgaattggtaacgaatccgaaactgttaagagcaatt
aaggaaatgggatatgaggaagcgacaccgattcaggaagccgttattcccatgattgcg
ggcggcggtgatgtcattgcccggtcgcagaccggtaccggcaagacggcagctttttct
attccggtgttggataaaattgacgagaatttatcaagacctcaggttttgattttatgc
ccgaccagagaattggccgtgcaggtagccggagaaattcgaaagctgcttagcttttcc
cataatattaaggttttgccggtttatggcggcgagccgatttataagcagattatggcg
ctgaaaaaaggcgtgcaggtgattgtcggcacgccggggcggattatggatcatatggag
cggaaaaccctgcgctttagcgaagtacataccgttatcctggatgaggcggatgaaatg
ctgaaaatgggatttcgtgaggatattgagttcattttgacggcagttccggcagaggtg
caaaaactgctcttttcggccactatgccggcagaaattattgaactggccggcaaatat
ttgaaagaaccgggcgaggtcaaaatcgaggccagcggcattactaccgatacggtgctg
caaagctactgcgcggtgaaaaaggaattaaagccggaggcgctgtttcggattttggat
gataaatcgccggagcggtgcatggtattctgcaatacgaaaaaaatggttgatgagatc
accgatgctttgcaggaaagaggcttttggggcgataagattcatggtgatttaaagcag
gaactgcgcatgggcgtgctggaaaagttcaataagggtattttgcatattttggtctgc
accgatgtcgcggccagagggctggacattcaaaatgttgatctggtagtcaattatgac
gtaccggataaggaagaatactatgttcaccggattggtcgttccggccgggcaggcaag
gcgggcgagtcgattacgattgtgacgcgtcctgaccggattcgcttccgtaacgtggag
atttatattcaaaaaaagattgagcggatggagattccttccagagttgaagtgcgggag
aagcaaattacccgctttaccgaaaacctgctaagtaacatggaaaccgagcttttgtat
gattatgaagaaatggtggaaaagttacaggccaagggctattcggccaagcagatagca
gctgcgcttttgaggcaaacactggccgttgaggcagcggacgaggaaagagatgtcaat
gactatcgttttgacgcgcccaaacgggagcgctctgtgccggaacgcggccgggagcgg
ggaaaggaacgcgaacgcagcaaagacggaggtgcagagcgaaaaagagagcgggcggaa
aagccggccggcagtgagcgccgggagcggccgtttgaggaacggagtaagcacggtaag
cggaaaggaaaaccggaagaagtatttttcgagcggggcaaaagaaaggggaaagcggta
gccgagcaggttcggttgttcctgtcggccggcaagaagcacaaggtatcagttggtgat
gtggtcggtgcgattgtcggcgaagccggtattgatgcggcacatatcggtacgattgat
atgtatgataagttttcctttgtcgatgtcagcaaggaaagcgccaaaaaagtgctgaac
tctttgcagaataagcggatcaaaggccgtaagctgaatgtagagattgccaagggctaa
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