Lachnospiraceae bacterium oral taxon 500: C3V36_12145
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Entry
C3V36_12145 CDS
T05749
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
lbw
Lachnospiraceae bacterium oral taxon 500
Pathway
lbw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lbw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C3V36_12145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lbw03021
]
C3V36_12145
03019 Messenger RNA biogenesis [BR:
lbw03019
]
C3V36_12145
Transcription machinery [BR:
lbw03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
C3V36_12145
Messenger RNA biogenesis [BR:
lbw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
C3V36_12145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
OB_RNB
S1CSD-TOTE-2
Spore_III_AA
NACHT
AAA_22
AAA
AAA_25
ATPase_2
Rho_N
ABC_tran
AAA_24
SRP54
Motif
Other DBs
NCBI-ProteinID:
AVM69926
LinkDB
All DBs
Position
complement(2663298..2664758)
Genome browser
AA seq
486 aa
AA seq
DB search
MSISINYSKFKVSELRRLAQTELGIQDAKGFLKSELVDLLTQNEEKKAEADSKKTAAAPR
KAHAADKEKTAPAADQRGIKPEKNEKTEKTAERNSREYREEAEESSMPEEMMKLDSGNVA
YGLLEVLPDGFGFIRSDNYMPGENDVYVAPSQIRRFQLQTGDIISGSIRKSKEKEKFQAL
LYVNTVNGQPASAVIGRPRFEDLTPIFPDERISLATEYNNYSLRLMDFIAPIGKGQRGMI
VSPPKAGKTTLLKKVANAITQNHPEINLIVLLIDERPEEVTDIKRSIHGDKVEVIHSTFD
ELPEHHKRVAEMVLARAQRMVEQKEDVVILLDSITRLARAYNLIIPSSGRTLSGGLDPAA
LYMPKKFFGAARNIEEGGSLTILATALVDTGSKMDDVIFEEFKGTGNMELVLDRKLQEKN
IFPAIDITKSGTRRDDLLYSATEAEAAAKLRRMTNNMRSEDVIEGMLRTFATTRTNEEYC
KRVIEM
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgagtattagtattaattattccaaatttaaagtcagcgaattgcggcgtttggctcag
acagagttggggattcaggatgccaagggctttttaaaaagcgaattggtagatttgttg
acccaaaatgaggaaaaaaaagcagaagccgacagcaaaaaaacggcggcagcgccgaga
aaagcacatgcggcggacaaagaaaagacagcaccggctgccgaccaaagagggataaag
ccggaaaaaaatgaaaaaacagaaaaaaccgcagaaagaaacagtcgggaataccgggag
gaagcggaagaaagctccatgccggaggaaatgatgaagctggacagcggcaatgttgct
tacgggttgctggaggttttgccggatggctttggctttattcgcagtgataattatatg
ccgggcgaaaatgacgtttatgttgccccgtcgcagattcgccgttttcagctgcaaacc
ggcgatattatcagcggcagtattcgcaaaagcaaggaaaaagaaaagtttcaggcactt
ttgtatgtcaataccgttaacggtcagccggccagcgcggtcatcggccggccgaggttt
gaggatttgacgccgatttttcctgatgaaaggatttccctggcgaccgaatataataat
tactcgctgcgtttgatggactttattgcaccaatcggcaaagggcaaagagggatgatt
gtttcgccgccgaaagccggaaaaacgaccttgctcaaaaaagtggccaatgccattacc
caaaatcacccggagattaatttaattgtccttttgattgatgaacggccggaagaggtc
acggatatcaagcgttcgattcacggtgacaaggtggaagtgattcattcgacctttgac
gaactgccggagcatcataaacgggtggcggaaatggtgctggccagggcacagagaatg
gtggagcagaaagaggatgtcgttattttgttagacagcattacgagactggccagagcc
tataatttgattattccgtccagcggccgaaccttatcgggtggtcttgatccggcggcg
ctgtatatgccgaaaaagtttttcggtgcggccagaaatatcgaggaaggcgggagtctg
acgattttagcaacggcgctggtcgataccggttccaagatggatgatgtgattttcgag
gaatttaaaggtaccggtaatatggagctggttttggacagaaaactgcaggagaaaaat
atttttccggcgattgatattaccaagtccggcaccagacgggatgatctgctgtattcg
gcgacagaagcagaggcggctgccaagctgcgccgcatgacaaataatatgcgttccgag
gacgtgatcgagggaatgctgcgtacctttgctactaccagaaccaatgaggaatactgc
aaaagagttattgagatgtag
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