Lachnospiraceae bacterium oral taxon 500: C3V36_13795
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Entry
C3V36_13795 CDS
T05749
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lbw
Lachnospiraceae bacterium oral taxon 500
Pathway
lbw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lbw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C3V36_13795
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbw03019
]
C3V36_13795
Messenger RNA biogenesis [BR:
lbw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C3V36_13795
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AVM70226
LinkDB
All DBs
Position
complement(3017686..3019383)
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AA seq
565 aa
AA seq
DB search
MWRYFLKNKQQEKHEDKIKIIPLGGLDQIGMNITLFEYKNDIIIIDCGLAFPDEEMLGID
LVIPDFSYLKQNADKVRGLVVTHGHEDHIGAIPYLLKELNIPVYGSRLTLGLVENKLKEH
KILEKCKLKSVGMGQSVRLGKFRAEFIRTNHSIPDAAAIAIHTPLGVIIHSGDFKVDYTP
IYGKAIDVHRLAELGREGVLALLADSTNVLREGYTMSESTVGKSFDAIFNENKGRRLIVA
TFASNVDRVQQIINSAKAHRRKVAVEGRSMVNVVTTAQELGYIKMPKNMLISSDELDNYK
DSQVVIITTGSQGEPLSALSRIANNTHRKISIKEGDLVILSSKPIPGNEKYIARVINGLY
KKGADVIYEDTHVSGHACREELKLLHTLVRPRYFIPVHGEYRHLKSHQELAVELGMQKKD
VYILENGNVFALSQDGGEVIDKIPIETVLVDGLGVGDVGDVVLRDRQKLSQDGLIVVSIV
VDRYTSEILASPEIVSRGFIYVKENASLMDDIKDIVSRSLERATMKNIHDWTKIKTMIRD
DIREYLWQYLKRNPMVLPVLTQVEV
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgtggaggtattttttgaaaaacaaacaacaagaaaaacatgaagataagataaagatt
attccgctcggggggttagaccaaatcggaatgaatattaccttatttgaatataagaat
gatattattatcattgactgcggattagcgtttccggatgaagaaatgctgggaattgat
cttgtcattccggatttttcctatttaaagcaaaatgccgacaaagtgcggggcttagtg
gtaacgcacgggcatgaggatcacatcggcgcgattccatatttattaaaggaattaaat
attccggtttacgggagccgcttgactttaggtttagtggaaaacaagctgaaggaacat
aaaattttagaaaagtgcaagctcaaaagcgtcggcatgggacaaagtgtgcggctgggc
aagtttcgggcggagtttatccgcaccaatcattcgattccggatgcggcggctattgcg
attcatactccgctgggtgtgattattcacagcggcgatttcaaggtggattatacgccg
atttacggcaaggcgattgacgttcatcgtttggccgagcttggccgggagggcgtgctg
gcgctgctggccgattcaaccaatgtgctgcgtgagggctataccatgtcggaaagtacg
gttggtaagtccttcgatgcgatttttaatgaaaataaagggcggcggctgattgttgct
acttttgcgtccaatgttgaccgggtccagcagattatcaactcggccaaggcgcaccgg
cgcaaggtggcagtcgagggccggtcgatggttaatgtggttacgaccgcgcaggaactg
ggctatatcaaaatgccgaaaaatatgctgatcagcagtgatgaactggataattataag
gacagtcaggtggtcattattactaccggcagccaaggcgagccgctgtcggcgctgtcg
agaatagccaataatacgcaccgcaaaattagtatcaaagaaggcgatttggttatttta
agctccaaaccgattcccggcaatgaaaaatacatagccagagtaattaacggcttgtat
aaaaagggtgcggacgttatttatgaggacacccatgtatcggggcatgcttgccgcgaa
gaattgaaacttctgcacactttggtgcgcccgcggtattttatcccggtgcacggtgag
taccggcacttgaaatcgcatcaggaactggcggtggagctgggtatgcagaaaaaagat
gtttatattttggaaaacgggaatgtctttgctttgtcgcaggacgggggcgaagtaatt
gataagattccgattgaaaccgtattggttgacggtttgggcgtcggcgatgtcggtgat
gttgtgctgcgtgaccggcaaaagctgtcgcaggatggattgattgtagtttcgattgtg
gttgaccgctataccagtgagatcctggccagccccgaaatcgtatcgcgcgggtttatt
tatgtcaaggaaaacgccagtttgatggatgacattaaagatattgtcagccgatcgctg
gaaagagcaactatgaaaaatatccatgactggacgaagattaagacaatgattcgagat
gacattagagaatatctgtggcagtatttgaaacggaatccgatggtactgcccgtcctg
acacaagtggaggtatag
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