Lachnospiraceae bacterium KM106-2: lbkm_0068
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Entry
lbkm_0068 CDS
T08927
Name
(GenBank) ATP-dependent DNA helicase UvrD/PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
lbx
Lachnospiraceae bacterium KM106-2
Pathway
lbx03420
Nucleotide excision repair
lbx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lbx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
lbkm_0068
03430 Mismatch repair
lbkm_0068
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lbx03400
]
lbkm_0068
Enzymes [BR:
lbx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
lbkm_0068
DNA repair and recombination proteins [BR:
lbx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
lbkm_0068
MMR (mismatch excision repair)
Other MMR factors
lbkm_0068
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_11
UvrD_C_2
AAA_30
ResIII
AAA_16
DEAD
Motif
Other DBs
NCBI-ProteinID:
BBF41394
UniProt:
A0A7U6QHZ9
LinkDB
All DBs
Position
67880..69787
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AA seq
635 aa
AA seq
DB search
MNYEQYLERLNEYQKMAVYDDSKACLVNANVGSGKTTVLISKIIYLHYAKGVPYESMAVL
TFTNKAADEIKERLQAIDDSVSSEQLNNFGTFHSVALSILKNCLAIESKGFTKDFLVVEP
EEEIDLAMQLIEENKLVIKYKNRLKKRLEQARMIQDEERKISRYQDDIFTLVTLLKEEKI
KQDKMSFTDLIEYANELLQRSDQKPDWIIVDEVQDCDSLQLSFLQQLRKEETSLFAVGDP
NQVIYSWRGSECNVFYRLKETYQAKVLSLPINYRSSTTILEAAKCFLQNGGKLSGIRDQG
SRIVVNKQYNSFNEACYLAEKIKRLHDEGTAYGDIAIFYRLQSQSKSFEDVFAKEGIPYE
VSIKKTIKDIPVLNWLIFVMRYSANPGDQLAAVHALSNKEYGERLTVKKARATIKENQMF
LSPLLDRMSGLNQFCGKEQKVSAEKLYEYFEFDSFIRPTSATYQDDKESILRLLTIIGNE
TEGRPFMEGLKEFLNTSALYGLPVVDRMVSQQKDAVKLMTLHASKGLEFSYVFITGVNYG
LIPLQAKSFEDEEEERRLFFVGITRAKDYLELSYYTNPDFPRTMPGESRFLSMIPPHLLS
RDGEELEEVNLHDLKKQIQKVKEAARKDEIQEEAV
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgaactatgagcagtatctagaacggctaaatgaatatcagaagatggcggtttacgat
gatagtaaggcttgccttgtaaatgccaatgtgggaagtggtaagactaccgttttaata
tcgaagatcatctatcttcattatgcgaagggagttccttatgaaagcatggcggtgctt
acctttaccaataaagcggcggatgagatcaaagaacgtctgcaggcgattgatgatagt
gtatcgagtgaacagttaaataactttggaacctttcatagtgtggcactttcaattctt
aagaattgtttggcgattgaatcaaaaggattcacaaaggattttcttgttgttgaacca
gaagaagagatcgatcttgccatgcagctgattgaagaaaataagctggtgattaaatac
aagaaccgattaaaaaagcggttagagcaagccagaatgatccaagatgaggagcgaaag
atctccaggtatcaggatgatatctttacgttagtaaccttacttaaggaagagaagatc
aagcaggataagatgtcttttaccgatttgatcgagtatgccaatgaattattgcagcga
tccgatcaaaaaccagactggatcatcgtagatgaagttcaggactgtgattcgcttcaa
ttatcgtttctgcagcaattaaggaaagaagagacttctctgtttgcagtgggggaccct
aatcaggtcatttatagttggcgcgggagtgagtgtaatgtcttttatcgcctcaaggaa
acttatcaggcgaaggtgttatcccttccaatcaattatcgatctagtactaccatttta
gaagcagcaaagtgctttttacaaaatggaggaaagctctcagggattcgagatcaggga
agcaggatcgtggttaacaaacagtataattcctttaatgaggcatgttatctagcggaa
aagattaaacggcttcacgacgagggaaccgcttatggcgatattgctattttctatcgt
ttgcaaagtcagtcaaagtcatttgaagatgtctttgcaaaagaaggaattccttatgaa
gtttctattaagaagacgataaaggatattcctgttcttaactggcttatatttgtaatg
cgttactcagccaatcctggtgatcagttagcagcagtccacgcattatcaaataaagaa
tatggagaacgactaacggtcaaaaaggcaagagcgaccataaaggagaatcagatgttt
ctatctcctttattagatagaatgtcaggattaaaccagttttgtggaaaggaacagaaa
gtatcggcagagaagctatatgaatattttgaatttgattctttcatccgtccaacctct
gcgacctatcaggatgacaaagagagtatcttaagactactcactattattggtaacgaa
actgagggaagaccatttatggaaggattaaaagaattcctaaatacatctgcattatat
ggactgccggttgtagataggatggtgtcacagcagaaagatgcagttaaactgatgacc
ttacatgcatcgaaaggtttggagttttcctatgtatttattacaggggttaattatgga
ttaattccattgcaggcgaaaagttttgaagatgaagaagaggaacgaagattatttttt
gttgggataacaagggcaaaggattatttggaactctcttattataccaatcctgatttc
ccaagaacaatgccaggagagagccgcttcctttctatgattccaccacatttattgagt
cgtgatggagaggaattagaggaagtaaatcttcatgatctaaaaaaacagatacagaaa
gtgaaagaggctgcaaggaaagatgaaatacaagaagaagcggtatag
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