Lachnospiraceae bacterium KM106-2: lbkm_0342
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Entry
lbkm_0342 CDS
T08927
Name
(GenBank) ATP-dependent RNA helicase YxiN
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lbx
Lachnospiraceae bacterium KM106-2
Pathway
lbx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lbx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
lbkm_0342
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbx03019
]
lbkm_0342
03009 Ribosome biogenesis [BR:
lbx03009
]
lbkm_0342
Enzymes [BR:
lbx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
lbkm_0342
Messenger RNA biogenesis [BR:
lbx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
lbkm_0342
Ribosome biogenesis [BR:
lbx03009
]
Prokaryotic type
rRNA helicases
lbkm_0342
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Phage_integrase
Motif
Other DBs
NCBI-ProteinID:
BBF41662
UniProt:
A0A7U6QHW9
LinkDB
All DBs
Position
371173..372618
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AA seq
481 aa
AA seq
DB search
MDMNRFTEFGLSEDIIEALSLLGYLMPTEIQGAVIPRALCGQDIIGKSKTGSGKTAAFAI
PVCEAVVWEDNLPQAIVLEPTRELAYQVKDEIFNIGRMKRINVPVVFGGFSFEKQANTLK
QKSHIVVGTPGRVLEHCQMGTLKCEQVKYIIIDEADLMLDMGFIDEVKQIFAFMPERKVT
LLFSATMSDSLYSLADEFMNKPLEIKLESDTETVDRIVQEGYFVEEEDKFDLFLKVLYKE
NPKSGIIFCGTREMAEVLYYKLKKEQIMCGVLHGLIDQRQRIRTIEKFRSKGFRYLIATD
VAARGVDFEKITHVFNYDLPTSKETYVHRIGRTGRNQSDGKAISLIKQDEIKMYRAIEQF
TQAPIKICSSPKDEETSENKIHFEETQHVKQRRQKKKGDVFKNQIMKLSIGGGRKSKLRA
GDVVGTIAGIDGINANEDIGVIEIRDSMTYVEILNGKGNRVLEELPKRTMKGKYRKVNRV
R
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atggatatgaatagatttacggagtttggtttaagtgaggatattattgaggcgttatcg
ttgttggggtatttgatgccgacggagattcagggggcagtgattccgagggcactttgt
ggacaggatattatcgggaaatcgaagacgggtagtgggaagacggcggcttttgcgatt
ccggtttgtgaggcggttgtgtgggaggataatttaccacaggcgattgttttggagccg
acgagagagttagcttatcaggttaaggatgagatttttaatattggtaggatgaaacgg
atcaatgtgccagttgtttttgggggtttttcttttgagaagcaggcgaatactttgaag
cagaaatctcatattgttgttggtacgccgggaagggtgttggaacattgtcagatgggc
actttgaagtgtgagcaagtgaagtatattataattgatgaagcggatctgatgctggat
atgggattcattgatgaggttaagcagatttttgcttttatgccggaacggaaagttacg
ctgttattttcggcaacgatgagtgattctctttattctttggcagatgagtttatgaat
aagcctttagagattaaattagagagtgatactgagacggtggatcggattgttcaggaa
gggtattttgtggaggaagaggataaattcgatctctttttaaaggtgttatataaagag
aatccgaaaagcgggattatcttctgtggaacaagagaaatggctgaggtattgtattat
aagttgaagaaggagcagattatgtgtggcgtgctgcatggtttgatcgatcagaggcag
agaatacggaccattgaaaagttccgttcgaagggattccgttatttgatcgctacggat
gtagcggctaggggagtggattttgaaaagattactcatgtctttaattatgatctgcca
acttccaaagagacttatgttcatcggattggaaggacaggacgaaatcagtctgatgga
aaggcaattagtctgatcaaacaggatgagattaaaatgtatcgggcaattgagcagttt
acacaggcaccgatcaagatctgttcttctccaaaagatgaggagacgagtgaaaataag
attcattttgaggagacgcagcatgttaagcagagacgacaaaaaaagaagggtgatgtc
tttaagaatcagatcatgaaactttcgattggtggaggacgtaagtctaagctgcgtgcc
ggcgatgtggttggaacgattgcaggaattgatggaatcaatgcaaatgaggatattgga
gtgattgagatccgtgatagtatgacttatgtagagatactgaatggtaaaggaaaccga
gtgttagaggaactgccaaagcgtacgatgaaaggtaagtatcgaaaagtaaatcgggta
agatag
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