Lachnospiraceae bacterium KM106-2: lbkm_0748
Help
Entry
lbkm_0748 CDS
T08927
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
lbx
Lachnospiraceae bacterium KM106-2
Pathway
lbx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lbx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
lbkm_0748
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbx03019
]
lbkm_0748
03016 Transfer RNA biogenesis [BR:
lbx03016
]
lbkm_0748
Enzymes [BR:
lbx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
lbkm_0748
Messenger RNA biogenesis [BR:
lbx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
lbkm_0748
Transfer RNA biogenesis [BR:
lbx03016
]
Prokaryotic type
tRNA degradation factors
lbkm_0748
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
KH_1
S1_RRP5
KH-I_KHDC4-BBP
RNase_PH_C
KH_KhpA-B
KH_NusA_1st
RNase_P-MRP_p29
OB_RRP5_4th
KH_PNO1_2nd
KH_2
Motif
Other DBs
NCBI-ProteinID:
BBF42066
LinkDB
All DBs
Position
765689..766777
Genome browser
AA seq
362 aa
AA seq
DB search
MFTRGQTQILTVTTLAPLSEAQRLDGLDETETSKRYMHHYNFPSYSVGETKPSRGPGRRE
IGHGALAERALVPVLPSEAEFPYAIRTVSETMESNGSTSQASICASSLSLMSAGVPIKKP
VAGISCGLVTGDTDDDYLVLTDIQGLEDFFGDMDFKVAGTRDGITAIQMDIKIHGLTRPI
IEEAIARTREARLYILNDVMDPVISAPRATVGKYAPKIVQIQIDPAKIGDVVGQRGKTIN
AIIEQTGVKIDISDEGSVSVCGTDGEMIDEAVKMIKIITTDFTEGQLLEGKVISIKEFGA
FIEFAPGKEGMVHISKISKERINKVEDVLTLGDVVKVVCLGKDKMGRISFSMKDVKDEND
TK
NT seq
1089 nt
NT seq
+upstream
nt +downstream
nt
atgttcactcgtggacaaactcaaatcttaacagtaactactttagctcctttatcagaa
gctcaaagattagatggcttagatgaaacagaaacttcaaaacgttacatgcatcattat
aacttcccttcatactctgttggtgaaacaaaaccaagtagaggtccaggacgtcgtgaa
atcggtcatggtgctctagctgaacgtgccttagttccagttcttccaagtgaagcagaa
ttcccatatgcaattcgtacggtatctgaaactatggaatctaacggttctacttctcaa
gcaagtatttgtgcatccagtctttctcttatgagcgcgggtgttccaattaagaaacca
gttgctggtatttcttgtggtcttgttactggtgatacagatgatgattatttagtatta
acagatatccaaggtcttgaagatttctttggcgacatggactttaaggtagctggtact
agagatggtatcactgcaattcagatggatattaagatccacggattaactcgtccaatt
atcgaagaagcaattgcaagaacgagagaagctagattatatatccttaatgatgttatg
gatcctgttatcagtgctccaagagcaacagttggtaaatatgctcctaagatcgttcag
atccaaattgatccggctaagatcggtgatgttgttggtcaaagaggtaagacaattaat
gctatcatcgaacaaacaggcgttaagatcgatatctccgatgaaggttctgtatctgta
tgtggtacagatggcgaaatgatcgatgaagcagttaagatgatcaagatcatcacaact
gatttcacagaaggtcaacttttagaaggtaaagttatctctatcaaagaatttggtgca
tttatcgaattcgcaccaggtaaagagggaatggttcacatttctaagatttctaaagag
agaatcaacaaggttgaagatgtattaactcttggagatgtcgttaaagttgtttgtctt
ggtaaagataaaatgggcagaatttcatttagtatgaaagatgtgaaagacgaaaacgat
acaaaataa
DBGET
integrated database retrieval system
