Lachnospiraceae bacterium KM106-2: lbkm_1682
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Entry
lbkm_1682 CDS
T08927
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
lbx
Lachnospiraceae bacterium KM106-2
Brite
KEGG Orthology (KO) [BR:
lbx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lbx03032
]
lbkm_1682
03400 DNA repair and recombination proteins [BR:
lbx03400
]
lbkm_1682
Enzymes [BR:
lbx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
lbkm_1682
DNA replication proteins [BR:
lbx03032
]
Prokaryotic type
DNA Topoisomerases
lbkm_1682
DNA repair and recombination proteins [BR:
lbx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
lbkm_1682
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Zn_ribbon_RPB9
Toprim_4
HVO_2753_ZBP
Zn_ribbon_recom
Toprim_2
Zn_ribbon_IS1595
Motif
Other DBs
NCBI-ProteinID:
BBF42996
UniProt:
A0A7U6QJH5
LinkDB
All DBs
Position
complement(1750916..1753000)
Genome browser
AA seq
694 aa
AA seq
DB search
MPKYLVIVESPAKAKTIKKFLGSNYEVMASNGHVRDLPKSQLGIDIENDFEPKYITIRGK
GELLAKLRKEVKKADKVYLATDPDREGEAISWHLSKALKLEGKSVHRIAFNEITKNAVKS
SIKQAREIDMDLVDAQQARRVLDRMVGYKISPLLWAKVKRGLSAGRVQSVALRLICDREE
EINAFVPEEYWSLDASFAVQGDKLPLLAKFYGDTKGKIAIHNEEELNQILDKVQNAEFKI
SNIKKGERVKKSPLPFTTSTLQQEAAKTLNYSTQKTMRLAQALYEGVDVKGRGTVGLITY
LRTDSTRISDEAKASAREFILNEYGDSYVSEEEKKKASTKKIQDAHEAIRPTYIELTPVS
VKESLSRDQFRLYQLIWKRFVASRMKEAVYETTSIKIDGGGYRFTSAASKVIFDGFMSVY
TSDEDKEETNRLSKTIDMDSSLSVNEFEHKQHFTQPPAHFTEATLVKTLEELGIGRPSTY
APTITTIMARRYVVKENKNLYVTEIGEVVNHIMCQQFASIVDVNFTVNLESLLDAIEAGK
INWKTVVKNFYPDLAEAVEAAEKELEQYKIEDEVTDVICDECGRNMVIKYGPHGKFLACP
GFPECRFTKPYLEKIGVPCPKCGNEVVIRKTKKGRKYFGCENYPDCDFMSWQKPSKEKCP
DCGDVLLEKGNKLVCMNKQCGYVRPRNNQENKED
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atgccaaagtatttggtgatagtggaatcaccggctaaagctaagacgattaaaaaattt
ctaggcagcaattatgaagtaatggcatccaatggtcatgtgagagatttacctaagagt
caattaggaattgatatagagaatgattttgagccaaagtatattacgatacgtggaaaa
ggagaattacttgcgaaacttcgtaaagaagtgaaaaaggcagataaagtatatctcgca
accgatcccgatcgtgaaggagaggcgatctcctggcatttatcaaaagcacttaagctt
gaaggtaaaagtgttcatcgaattgcatttaatgagattacaaagaatgcagttaaaagt
tcgatcaagcaggcgagagagatcgacatggatttagttgatgcgcaacaagctcgtaga
gtacttgaccgtatggtcggttataagatcagtcctcttctttgggcgaaagtaaagaga
gggctcagtgctggacgtgtgcagtcagttgcgttacgtttgatctgtgaccgtgaagaa
gagattaatgcatttgttccagaagaatattggagcttagatgcaagttttgcagtacaa
ggggataagttacctcttttagcaaagttctatggtgatacaaaaggcaagatcgcaatt
cacaatgaagaagagttaaatcaaattttagataaagtacaaaatgctgagtttaagatc
agcaatatcaaaaagggagaacgtgttaagaagtctccacttccatttacaactagtaca
ttacaacaggaagcagcgaagacgttaaattactctacgcaaaagacgatgcgattagcg
caagcgttatatgaaggtgtagacgttaagggacgtggcactgttggtttgatcacatac
ttacgtaccgattctactcgtatctcagatgaggcaaaggcaagtgcaagagaattcatt
ttaaatgaatacggtgattcttatgtatcggaagaagaaaagaaaaaagcgtccactaaa
aagattcaggatgcccatgaagcaatccgtccaacttacattgaacttacacctgtaagt
gtaaaagaatctttatcaagagatcaattccgtttgtatcaattgatctggaaacgtttt
gttgccagcagaatgaaagaagcagtatatgaaacgacttcgatcaagatcgatggtggc
ggataccgattcacaagtgctgctagcaaagtgatatttgacggttttatgtctgtatat
acttcagacgaagataaagaagagacgaatcgtttatcaaagacgatcgatatggattct
agtttaagtgttaacgaatttgaacataaacaacatttcactcaaccaccggcgcatttt
acggaagctacgttggttaagacgttagaggaattaggcattggtcgtccaagtacctat
gcgccaacaattacaacaattatggcaagacgatatgttgtgaaagaaaataagaattta
tatgttactgaaatcggagaagttgttaatcacattatgtgtcagcagtttgcaagtatt
gttgatgtaaactttactgttaatctggaaagtttacttgatgcgattgaagctggtaag
attaactggaagacggtagtaaagaatttctatcctgatctagcggaagcagtagaggca
gcagaaaaggaacttgaacaatataagattgaagatgaagtaacagatgtaatctgtgat
gagtgcggtcgcaatatggtaattaaatatggtccgcacggtaaattccttgcgtgccca
ggattccctgaatgtcgttttacaaaaccatatcttgaaaagattggggtgccttgtccg
aaatgtggtaatgaagttgttatccgtaagacgaaaaaaggtagaaaatattttggctgc
gaaaattatccggattgtgatttcatgtcatggcagaaaccatccaaggagaaatgccca
gactgcggcgatgtcttacttgaaaagggaaataaacttgtttgcatgaataaacaatgt
ggttatgtaagaccaagaaacaatcaggaaaataaggaagattaa
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