Lachnospiraceae bacterium KM106-2: lbkm_3020
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Entry
lbkm_3020 CDS
T08927
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
lbx
Lachnospiraceae bacterium KM106-2
Pathway
lbx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lbx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
lbkm_3020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lbx03021
]
lbkm_3020
03019 Messenger RNA biogenesis [BR:
lbx03019
]
lbkm_3020
Transcription machinery [BR:
lbx03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
lbkm_3020
Messenger RNA biogenesis [BR:
lbx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
lbkm_3020
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
SAP
NACHT
AAA_22
ATPase_2
S1CSD-TOTE-2
AAA_25
AAA
AAA_14
Spore_III_AA
AAA_24
Motif
Other DBs
NCBI-ProteinID:
BBF44331
LinkDB
All DBs
Position
complement(3204571..3206007)
Genome browser
AA seq
478 aa
AA seq
DB search
MNNQYESMSLASLKELAKERGMKSVSTLRKHELIEALMKYDEGHSKKEEQPKKEYINKEN
NHNNQNRENNQNHMRENNETAHNNDRVKDETKLKKQAEFEQLDSGVVKRGILEVLPDGYG
FIRCDNYLPGENDVYVSPAQIRRFNLKTGDIVEGNIRVKSQNEKFCALLYVKSVNSLPPI
EACRRKKFEDLTPIFPNHKIRLECGAQPIAMRMMDLIAPIGKGQRGMIVSQPKTGKTTLL
KQVAKSITQNHPEMYLIILLIDERPEEVTDIKESIEGNHVEVIYSTFDELPENHKRVSEM
VLERAKRLVEHKKDVIILLDSITRLARAYNLTVQASGRTLSGGLDPAALHMPKKFFGAAR
NMREGGSLTILATALVDTGSRMDDVVFEEFKGTGNMELVLDRSLSEKRIFPAIDLPKSST
RRDDLLLSKTESEASYIMRKALNGVKSDEALERIIDLFMKTKNNNEFAEIVKKTRLTN
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atgaataatcagtatgagtctatgtcattggctagtttgaaagaacttgcgaaagagcga
ggtatgaagagtgtctccacgttgaggaaacatgaattaattgaagctcttatgaaatat
gatgaaggacatagcaaaaaagaagaacaacctaaaaaagaatatattaataaggaaaat
aatcataataatcaaaatagagagaataatcaaaatcatatgagggaaaacaacgaaact
gcgcataataatgatagagtaaaagatgagactaagttaaaaaagcaggctgaatttgaa
cagttagacagtggcgtcgttaagcgaggaattcttgaggtattaccggatggatatggt
tttattcgatgtgacaattatcttcctggcgagaatgatgtttatgtatcaccggcacaa
attcgtagatttaatttaaagactggtgatatcgtagaaggaaatattcgtgttaaaagt
cagaatgagaaattctgtgcattactatatgtaaaatcagtaaatagtctgcctccaatt
gaagcatgcagacgtaagaagtttgaagatttgacaccaatattcccgaaccataagatc
cgtctggagtgtggagcacagccgatcgcaatgagaatgatggatttaattgcaccgatc
ggaaagggacaaagaggtatgatcgtatctcagcctaagaccggtaaaactaccttatta
aaacaggtagcaaaatcaattacacagaatcatccggagatgtatctgatcattttatta
attgatgaacgtccagaagaagttacggatattaaggagtcaattgaaggcaatcatgta
gaagtaatctactctacatttgatgaacttccagaaaatcataaacgtgtttctgagatg
gtacttgaaagagcaaaacgtcttgtagagcacaagaaagatgttattattctcctagat
agtattacgagacttgcaagagcgtataatcttacggttcaagcaagtggacgtacgtta
tcaggtggtcttgatccagcagcattacacatgccgaagaaattctttggtgcagcaaga
aatatgagagaaggcggaagtcttacgattcttgcaactgcgttagttgatactggcagc
agaatggatgatgttgtatttgaagaatttaagggtactggtaacatggaattagtattg
gatcgaagcttatcagaaaagagaattttcccagctattgatttaccgaaatcaagtaca
agaagagatgatctgttgttatcaaaaacagagtcggaagcaagttatattatgcgtaaa
gctctcaatggagtgaagtctgatgaggcattagagcgtattatcgatctgttcatgaag
acaaaaaataacaatgaatttgctgaaattgtgaaaaaaactcgattgacgaattaa
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