Lachnospiraceae bacterium KM106-2: lbkm_3504
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Entry
lbkm_3504 CDS
T08927
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lbx
Lachnospiraceae bacterium KM106-2
Pathway
lbx03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lbx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
lbkm_3504
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lbx03400
]
lbkm_3504
Enzymes [BR:
lbx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
lbkm_3504
DNA repair and recombination proteins [BR:
lbx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
lbkm_3504
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
RecG_dom3_C
UB2H
IstB_IS21
Rif1_N
Motif
Other DBs
NCBI-ProteinID:
BBF44770
UniProt:
A0A7U6KIZ8
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All DBs
Position
3674356..3677892
Genome browser
AA seq
1178 aa
AA seq
DB search
MNTFLEPLKELNEYSEVVQDLRLNNTPIQITGCINSQKCHLMYGLAGSAVFKLIVTYNDL
NAKEIYEDYKLYDKDVYFYPAKDVIFYSADIHGNAIVRDRLKILKRIIEQKPTTIITTID
AGMDQILPLEFIRQRVISIRAEQTLDLEWLKAEMIYLGYERCAQVETPGQFAIRGGIIDI
FPLTEEVPYRVELWDEEVDTIRSFDVESQRSIEQIEELLIYPAAEIILDKAVLEKGKRAI
AKESEEYIAALKEEKKREEAKRIKDISNEFLENLDYYNGSIAMDSYIKYFYKNTVSFFDY
FTAENSIVFIDEPGRIEEKAEAVQTEFRESMIGRIEKGYILPSQVDVLFVYQELMVKLSN
GKAVSISTMDYRIDSFHPKAKYDFTVKSISPYNHNFEMLVKDLKKWKENGYRIVLLSSST
SRATRLSEDLREHGLSAFFSDDFNRVVNPGEILVSYGALHKGFEYPMIKFAMISDSDIFG
AEKKKRRKKKVYDGAKVHSFTDLNVGDYVVHENHGLGIYKGIEKIEVDKVAKDYIKIEYA
NSGVLYILATGLEVLQKYAGADARKPKLNKLNSVEWKNTKNRVRGAVKEIAQELVKLYAI
RSEKKGYQFGPDTVWQREFEEMFPYEETDDQLRAIDDTKQDMESTKIMDRLICGDVGYGK
TEIAIRAAFKAVEDGKQVVFLVPTTILAQQHYNNFVQRMKDFPVNIGMLSRFRTPAQSKK
VVEQLKEGKCDILIGTHRVLSKDIEFKNLGLLIVDEEQRFGVTHKEKIKQLKSDVDVLTL
SATPIPRTLHMSLVGIRDMSVLEEPPVDRLPIQTFVLEHNDEIIREAINRELARDGQVYY
VYNRVSNIDEVANAIAELVPEANVAFAHGQMSERELEKIMFGFINGDIDVLVATTIIETG
IDISNVNTMIIDDADRLGLSQLYQLRGRVGRSNRTSYAFLMYKRDKMLKEVAEKRLQAIK
EFTELGSGFKIAMRDLEIRGAGNLLGARQHGHMEAVGYDLYCKMLNEAVKELKGESKEED
QFDTTVDVDIDAYIPATYIKSEFQKLDIYKRVAEIQNEEEFMDMQDELVDRFGDMPGCVN
NLLNIAYLKSIAHNAYVTQLVQKDNRVRMAMYEKAMIDVSKLPGLLEKYGKTLNVEKGKN
PTFVFEIPRKKNNKIDITTMFESVKQVLLDIQAIKLES
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgaatacatttttagaaccattaaaagagttaaatgaatatagtgaagtcgtacaggat
ctgcgacttaataatacaccaattcagataactgggtgtatcaattctcagaagtgccat
ttgatgtatggacttgccggttcggcagtctttaaattaattgttacgtataatgattta
aatgcgaaagagatttatgaagattataaattgtatgataaggacgtttatttctatcct
gccaaggatgttattttctatagcgcggatatccatggaaatgcaattgtaagagatcga
ttaaaaatcttaaaacgtattattgaacagaaaccaacaaccattattactacaattgat
gcaggaatggatcaaatcctgccattagaatttataagacagcgcgtgatctcaattaga
gcagagcagacgttggatttagaatggctaaaggcagaaatgatctatcttggttatgag
agatgtgcccaagttgagacacctggacaatttgcaatccgaggcgggatcattgatatc
tttccattaacagaagaagttccatatcgtgtggaactatgggatgaagaagttgatacg
attcgatcctttgatgtggagagtcaacgttcgattgaacagatagaggaattgctgatc
tacccggcagcagaaattattttagataaggctgttttagaaaaaggtaaacgagccatt
gcaaaagaatcagaagaatatattgctgcgctaaaagaagaaaagaaacgggaagaagca
aaaagaattaaagatatttcgaatgagtttttagaaaatctagattattacaatggctca
atagcgatggatagctatatcaaatatttttataaaaataccgtttccttttttgattat
tttactgctgagaattccattgtctttatcgatgaaccaggtagaattgaagaaaaagca
gaagctgttcagacagagtttcgagagagtatgatcggccgtattgagaaaggttatatt
ttacctagtcaggtagatgttctctttgtttatcaagaactaatggttaagttgtctaat
ggaaaggcagtaagtatcagtacgatggattatcggatcgactcctttcatccaaaggca
aaatatgattttacagtaaagagtatcagtccatataatcataattttgagatgcttgta
aaggatttgaagaaatggaaagagaatggataccgaattgtattgctttctagttctaca
agcagggccacgagattaagtgaagatttaagagagcatggtttgagcgcatttttcagt
gatgactttaatcgtgttgtgaacccaggcgaaatcctggttagttatggtgcacttcat
aaaggctttgaatatcctatgatcaagtttgctatgatcagtgatagtgatattttcgga
gcagaaaagaaaaaacgacgtaaaaagaaagtttacgatggtgcgaaggttcatagtttt
acggatcttaatgtgggtgattatgtagttcatgagaatcatggacttggtatctataaa
ggaattgagaaaatagaagtagacaaggtagctaaggattatatcaaaatcgagtatgcg
aatagcggagtattatatatccttgctacgggattagaagttctgcaaaagtatgcgggt
gcagatgctagaaagccaaaattaaataaattaaattcggttgaatggaagaatacaaag
aatcgtgttcgtggtgcggtaaaagaaattgctcaggaattagtaaaattatatgccatc
cgaagtgaaaagaagggatatcaatttggacctgatacagtgtggcagcgagagtttgaa
gagatgttcccatatgaagagacggatgatcaattaagagcgatcgatgacacaaaacag
gatatggaaagcacaaagattatggatcgtctgatttgtggtgatgttggatatggaaag
acagaaatcgcaattcgtgcagcatttaaagcggttgaggatggcaagcaagtagtattt
cttgtgcctaccaccatcttagctcagcagcactataataattttgttcaaagaatgaag
gacttcccagttaatattggaatgttatccagattccgtactccggctcagtctaaaaaa
gtagtggagcaattaaaagaaggaaaatgtgatatcctaattggaacacatcgcgtccta
tccaaagatattgaatttaagaatttaggtttattgatcgttgatgaggaacagcgtttt
ggtgtaactcataaagaaaagattaagcagctaaaaagtgatgtggatgttttaacatta
tcggcaactccaattcctagaactcttcatatgagcttggttggaattcgagatatgagt
gtgttagaagaacctccagtagatcgacttccaattcagacctttgtgttagagcataat
gacgagataattagggaagcaattaatcgagaattagctcgagatggtcaagtttattat
gtgtataatcgagtgagcaatatcgacgaagtcgccaatgcgatcgcagagctggtacct
gaagctaatgtggcatttgcacatggccagatgagtgaacgtgaattagagaagattatg
tttgggttcattaatggagatattgatgtccttgtggcaaccactattattgagacagga
attgatatttccaatgttaatacgatgatcatcgatgatgcagatcgtttaggcttatct
cagctgtatcagttgagaggtcgtgtcggccgttctaatcgtacttcttatgcgttctta
atgtataaacgagataagatgttgaaagaggtagctgagaaacgtcttcaagcgattaag
gaatttacggagttaggttcaggatttaaaatcgcaatgagagatttagagatccgtgga
gctggaaatctgttaggagccagacaacatggtcatatggaggcggttggatatgatctt
tactgtaagatgctaaatgaagcggtaaaagaattgaagggtgaatctaaagaggaggat
caattcgatactacagtagatgttgatattgatgcttacatccctgcaacttatattaaa
agtgaatttcagaaattggatatttataaacgtgttgctgaaattcaaaatgaagaagag
tttatggatatgcaggatgaactggtagatcgatttggagatatgccaggatgtgtgaac
aatcttttaaatatagcatatttaaaatcaatcgcacataatgcttatgtaacgcagtta
gtgcaaaaagataatcgggtgcgtatggcaatgtatgagaaggctatgatcgatgtatct
aagctgccaggattattagagaagtatggtaagaccttgaatgtggagaaaggaaaaaat
cctacctttgtatttgagatcccacgtaagaagaataataagatcgatattactacgatg
tttgaatcagtaaaacaagtattacttgacattcaggcgataaagttggaaagttaa
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