Lachnospiraceae bacterium KM106-2: lbkm_3506
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Entry
lbkm_3506 CDS
T08927
Name
(GenBank) tRNA pseudouridine synthase A
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
lbx
Lachnospiraceae bacterium KM106-2
Brite
KEGG Orthology (KO) [BR:
lbx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lbx03016
]
lbkm_3506
Enzymes [BR:
lbx01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
lbkm_3506
Transfer RNA biogenesis [BR:
lbx03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
lbkm_3506
Prokaryotic type
lbkm_3506
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
DUF2344
Pus10_C
Motif
Other DBs
NCBI-ProteinID:
BBF44772
UniProt:
A0A7U6KJ72
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All DBs
Position
3679074..3679862
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AA seq
262 aa
AA seq
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MCEKRNIKIIIAYDGAAYNGWQRLGNNDTKRTVQGTIELALKQCLNEKVDLVASGRTDAG
VHALGQVANFYMTNSMLLPEIKCKLNEILPADIRILTISEVPLKFHSRYDAVSKEYEYHI
DLRSKPDVFTRAYFLSFTEKLNIKSMKEAASYMLGKHDFAGFSSKMRDDRSTVRTIESIT
ITQEEDKLFIRVKGDGFLYNMVRIIVGTLLEAGTGVRTPESVLEILRTKDRQLAGYTVNS
HGLMLRHVWYPLDVLADKGSNC
NT seq
789 nt
NT seq
+upstream
nt +downstream
nt
atgtgtgaaaaacgaaatattaaaataattatagcatacgatggagcggcctataatggt
tggcaacgtctaggtaataatgatacaaaacggaccgttcaaggtacgatagaactagca
ctaaagcaatgtcttaacgagaaggtagacttggtcgcatctggtagaacagacgcaggg
gtacatgcgcttgggcaggttgcgaacttttatatgaccaattcgatgcttttaccagag
ataaaatgtaagctaaatgaaatactaccagcagatattcggattcttacgatcagtgag
gtaccgcttaagtttcatagcaggtatgacgctgtgagcaaagaatacgaataccatata
gatctgcgcagtaagcccgatgtttttacaagagcttattttctttcctttacagaaaaa
ctaaatataaaatcaatgaaagaagcagcatcctatatgttgggtaagcatgattttgca
ggattttcaagtaagatgagagacgatagaagtacagtaagaacaattgaatcgattacg
attactcaagaggaagataaactctttattcgagtaaaaggtgatggttttttatataat
atggtccgcattatagtggggactttattagaggcgggaacaggtgtgagaacacctgaa
agcgttcttgagatattaagaacgaaagaccgtcagttggccggttacacggtcaatagt
catgggttgatgttaaggcacgtatggtatcctctggatgtattagctgacaaagggagc
aattgttaa
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