KEGG   Lachnospiraceae bacterium KM106-2: lbkm_3571
Entry
lbkm_3571         CDS       T08927                                 
Name
(GenBank) excinuclease ABC subunit B
  KO
K03702  excinuclease ABC subunit B
Organism
lbx  Lachnospiraceae bacterium KM106-2
Pathway
lbx03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:lbx00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    lbkm_3571
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lbx03400]
    lbkm_3571
DNA repair and recombination proteins [BR:lbx03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     lbkm_3571
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      lbkm_3571
SSDB
Motif
Pfam: UvrB_inter UvrB_3rd UvrB Helicase_C ResIII UVR DEAD AAA_30 Mal_decarbox_Al AAA_22 UB2H Kinesin Phage_Mu_Gp48 DUF87 Microtub_bd DUF3644 LMWPc Thg1C FlaG SWI2_SNF2
Other DBs
NCBI-ProteinID: BBF44832
LinkDB
Position
3746916..3748898
AA seq 660 aa
MDHFELHSEFQPTGDQPEAIAQLVKGFKEGNQFETLLGVTGSGKTFTMANVIQQLNKPTL
ILAHNKTLAAQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSAINEEIDK
LRHSATAALSERSDVIIVSSVSCIYGLGSPIDYQNMVISLRPGMERDRDELLRKLVDIQY
SRNDMEFKRGSFRVRGDVIEVFPSNSSETAIRIELFGDEIDRISEIDVLTGEIKCNLEHV
AIFPASHYVVAPEKLQAAIVGIEEELEERVKYFKSEDKLLEAQRISERTNFDIEMLKETG
FCSGVENYSMHLAGLHPGNTPHTLMDYFPDEFLMIVDESHITIPQVRGMYAGDQARKSTL
VDYGFRLPSAKENRPLNFEEFEGKLDQMMFVSATPNVYEKEHELLRAEQIIRPTGLLDPE
VEVRPVEGQIDDLVSEVNKEIEKKNKILITTLTKRMAEDLTDYMREIGIRVKYLHSDIDT
LERAEIIRDMRLDVFDVLVGINLLREGLDIPEITLVAILDADKEGFLRSETSLIQTIGRA
ARNSEGHVIMYADKITDSMRKALSETERRRQIQQKYNEEHGITPQTIKKAVRDLISISKK
AEQTKRDLEKDPESMSKKELEALVKKIEKEMKKAAAELNFESAAELRDQLIHLKKMLTSL
NT seq 1983 nt   +upstreamnt  +downstreamnt
atggatcattttgaattacattcagaatttcagccaaccggtgatcagccggaggcgatc
gcacaattagtaaagggttttaaggaaggcaatcagtttgagaccctgcttggtgtaact
ggttctggtaagacatttacgatggcaaatgtcattcaacaattgaataagcctactttg
atactggcacataataagacattagcagcgcagttatatggagagttcaaagagttcttt
ccgaataacgccgttgagtattttgtaagttattatgattactatcaaccagaagcctat
gttccatcttccgatacttatattgagaaggatagtgccatcaatgaagaaatcgataaa
ctccgtcatagtgcaacagcagcattatcggagagaagcgatgtcatcatcgtatcgagt
gtatcctgtatttatggtttaggtagtccaatcgactatcagaacatggttatttcattg
cgtccaggaatggaacgagatcgcgatgagctgcttcgtaaattagtagatattcagtat
tctagaaatgatatggaatttaaacgtggttcgtttcgtgtgcgaggagatgtaattgaa
gtattcccatctaactcttcggaaacagcaattcgtattgagttatttggagatgagatc
gatcgtattagtgaaatcgatgttctaactggtgagatcaaatgtaatttagagcacgtt
gcgatcttcccagcttctcactatgttgtagcacctgagaaattacaggcagcgatcgtg
ggaattgaagaggaattagaagaacgagtaaaatattttaagagtgaagataaattatta
gaggcacagagaatttcagaaagaactaactttgatatcgagatgttaaaggagaccggt
ttctgttccggtgtagagaactactccatgcatttagctggattacatcctggcaatacg
cctcatacattaatggactacttcccagatgagttcttgatgatcgtggatgagtcacat
attacgattcctcaggttcgtggtatgtatgccggcgatcaggctagaaagtctacatta
gtggattatggtttccgtctcccaagtgcaaaggagaaccgtccacttaactttgaagag
tttgaaggaaaattggatcagatgatgtttgtgtcggcaacacctaatgtgtatgagaaa
gagcatgaacttcttcgagcagaacagatcattcgtccgaccggtttattggatccagaa
gtagaagtacgtccggtagaaggtcagattgatgatttagtaagcgaagtaaataaagag
atcgaaaagaagaacaagatcctgatcactacgttaactaagcgtatggcggaggattta
accgattatatgagagaaatcggtatccgtgtaaaatatctgcattcggatatcgataca
ttagagcgtgcggagatcattcgtgatatgcgtctggatgtctttgatgtattagtcgga
atcaacttacttcgagaaggtcttgatattccagagatcacattagttgcgattctcgat
gcagataaggaaggattcttacgtagtgagacttctctgattcagaccattggtcgtgcc
gcacgtaactcagaaggacatgttatcatgtatgcggataagattacggattctatgcga
aaggctcttagtgagactgagcgtagacgtcagatccaacagaaatataatgaggaacat
ggtattactcctcagacgatcaagaaggcagttcgtgatctgatcagcatttccaagaaa
gcagaacagacaaaacgtgatcttgagaaagatcctgagtctatgagcaagaaagagtta
gaagcattagtaaagaagatcgagaaggaaatgaagaaagcggcagcagaattaaatttc
gagagtgcagcagagcttcgagatcaattgatccatttaaagaaaatgttaacttcatta
tag

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