Lachnospiraceae bacterium KM106-2: lbkm_3572
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Entry
lbkm_3572 CDS
T08927
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
lbx
Lachnospiraceae bacterium KM106-2
Pathway
lbx03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lbx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
lbkm_3572
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lbx03400
]
lbkm_3572
DNA repair and recombination proteins [BR:
lbx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
lbkm_3572
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
lbkm_3572
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_29
RsgA_GTPase
AAA_16
nSTAND1
AAA_25
AAA_21
DnaJ_CXXCXGXG
BCA_ABC_TP_C
cobW
DUF7575
Motif
Other DBs
NCBI-ProteinID:
BBF44833
LinkDB
All DBs
Position
3748927..3751758
Genome browser
AA seq
943 aa
AA seq
DB search
MGNRNYIRIRGAKENNLKNVDLTIPRDEFVVFTGLSGSGKSSLAFDTIYAEGQRRYMESL
SSYARQFLGQMEKPNVESIEGLSPAISIDQKSTNRNPRSTVGTVTEIYDYFRLLYARVGI
PHCPNCGKEIKKQTVDQMVDEIMKLPEKTKIQLLAPVVRGRKGEHAKLFEQAKKSGYVRV
MVDGNLYELSEEIKLEKNKKHNIEIIVDRLMVRDGIQQRLADSIENVLKLAEGLMIVDVI
GGEPINFSESFSCPDCGISIAEIEPRNFSFNNPFGACPECSGIGIKMEFDEELIIPDKKL
SIMDGAITVLGWQSANDPSSYTYAILSALSKEYNFSLDTPWKDLSDEVRHMLIHGTNGKS
VKVYYKGQRGEGVYDVAFEGIIRNVERRYRETGSDTTKQEYETFMRVTPCKACKGQRLNK
ESLAVTVGGKNISEVTEYSIRDLQTFMGNLELSPTQMKIGEMVLKEIRARVGFLVDVGLD
YLTLARATGTLSGGEAQRIRLATQIGSGLVGVCYILDEPSIGLHQRDNDKLLNTLKHLKD
LGNTLVVVEHDEDTMFAADYIVDIGPGAGEHGGEVVATGTAEEIMKNPNSITGAYLSGKI
KIPVPEERRTPTGFLKVKGAKENNLKNVNVDIPLGVMTCVTGVSGSGKSSLVNEVIYKRL
AKELNRARTIPGKHTDIIGIEQLDKVIDIDQSPIGRTPRSNPATYTGVFDQIRDLFASTP
DAKARGFSKGRFSFNVKGGRCEACSGDGILKIEMNFLPDVYVPCEVCHGQRYNKETLEVK
YKGKSIYDVLDMTVEEALKFFENMPSIRRKIETLYDVGLGYVRLGQPSTTLSGGEAQRIK
LATELSKRSTGKTIYILDEPTTGLHFADVHKLIEILRRLSEGGNTVLVIEHNLDVIKTAD
YIIDIGPEGGDKGGTVVAKGTPEEVAKCKKSYTGQYVKKYLEK
NT seq
2832 nt
NT seq
+upstream
nt +downstream
nt
atgggaaataggaattatattcgcattcgtggtgcgaaggaaaacaatttaaaaaatgtc
gatttgaccataccacgagatgagtttgttgtatttacaggtttaagtggttctggtaaa
tcctcacttgcatttgatacgatctatgcagaaggccagagacgttacatggagtcctta
tcgtcttatgcaagacagttcttaggacagatggagaagccaaatgtagaaagtatcgaa
ggactttcaccagcgatcagtatcgatcagaaatcgacaaatcgtaatcctcgttctacg
gttggtacggtaacagaaatctacgattacttccgtttattatatgcgagagtcggaatc
cctcactgtccaaattgcggcaaggagatcaaaaaacagaccgtagaccaaatggtggat
gagatcatgaaacttcctgagaagaccaagatccagcttttagcacctgttgtaagaggc
cgtaagggcgagcatgctaagttattcgaacaagcgaagaagagcggttatgttcgtgtt
atggtggatggtaacttatatgagttatctgaagaaattaaattagagaaaaataagaaa
cataatatcgagatcattgtggatcgtcttatggttcgagatggtattcagcaacgtctt
gctgattccattgaaaatgttctgaaattagcagaaggtcttatgatcgttgatgtgatc
ggaggagaaccaattaacttcagtgaaagtttctcttgtccagattgcggaattagtatt
gcagagatcgagccaagaaacttctccttcaataacccatttggtgcatgtccagaatgt
tctggtatcggtatcaagatggagtttgatgaagagcttatcattcctgacaagaaatta
agcattatggatggagcgattactgtacttggatggcagtcagcaaacgatcctagcagt
tatacgtatgcaattctttcagcattatccaaagaatacaacttcagcttagatactcca
tggaaggatcttagtgatgaggttcgtcacatgctgattcatggaactaatggaaaaagc
gtaaaggtttattataaaggacagcgtggagaaggagtctacgatgttgcatttgaagga
atcatccgtaacgttgagagacgttaccgcgaaaccggttctgatacgacaaaacaagag
tatgagacatttatgagagtaactccttgtaaggcttgtaaaggtcagagattgaataag
gaatcactagccgtaaccgttggtggtaagaatatctcagaagtaacggaatattccatt
cgtgacttacagacatttatggggaacttagaattatctccaactcagatgaaaatcggt
gagatggtcttaaaagagattcgagctcgtgttggtttcttagtggatgttggtcttgat
tatctgactcttgcaagagcaacgggaacgttatccggtggtgaagcacagcgtattcgt
cttgcaactcagattggttctggccttgttggtgtatgctatatcttagatgagccaagt
atcggacttcatcagcgagataatgacaagttgttgaataccttaaagcatctgaaagat
ctgggaaatacccttgttgttgtagaacatgatgaagataccatgtttgcagcagactat
attgtggatatcggtcctggtgcgggtgagcatggtggagaagtggttgcgactggtacc
gctgaagagatcatgaagaatccaaattcgatcacaggtgcttacctaagtggtaagatt
aagattccggtaccggaagagagaagaacaccaactggtttcttaaaggtaaaaggagcg
aaagagaataacttaaagaatgtgaatgtggatattccacttggcgttatgacatgtgta
actggtgtatctggttctggtaagagttctcttgtaaacgaagttatttataagagactt
gcaaaagaattaaatcgtgctcgtacgattcctggaaagcatacagatattattggtatc
gagcagttagataaagttatcgatatagaccaatcaccgatcggacgtacgccacgttct
aatccagcaacatataccggagtatttgatcagatccgtgatctgtttgcttccactccg
gatgcgaaagcgagaggattctccaaaggacgattcagtttcaatgtaaaaggcggacgt
tgtgaagcttgtagcggtgatggtatcttaaagattgaaatgaacttccttcctgacgta
tatgttccatgtgaagtgtgtcatggacaacgttataataaagagacattggaagtaaaa
tataaaggtaagagtatttacgatgtacttgatatgacagtagaagaggcattgaagttc
ttcgaaaatatgcctagcatccgtcgtaagatcgagaccctttatgatgtcggacttggt
tatgttcgtttaggacagccatctacgacgttatctggtggtgaagcacaacgtatcaaa
ttggctacagaacttagcaaacgaagcacaggaaagacgatctatatcttagatgagccg
acaacaggacttcattttgctgatgttcataagttaattgagatattacgtcgtttatct
gaaggtggtaatacagtacttgttattgagcataatcttgatgtgatcaagacagctgat
tatattatcgatattggtccagaaggcggcgataaaggtggtacggttgttgctaagggt
acgccagaagaagtggcaaaatgtaagaaatcttatacaggacaatacgtaaagaaatat
ctagaaaaataa
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