Lachnospiraceae bacterium KM106-2: lbkm_3722
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Entry
lbkm_3722 CDS
T08927
Name
(GenBank) DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
lbx
Lachnospiraceae bacterium KM106-2
Pathway
lbx03030
DNA replication
lbx03430
Mismatch repair
lbx03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lbx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
lbkm_3722
03430 Mismatch repair
lbkm_3722
03440 Homologous recombination
lbkm_3722
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lbx03032
]
lbkm_3722
03400 DNA repair and recombination proteins [BR:
lbx03400
]
lbkm_3722
Enzymes [BR:
lbx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
lbkm_3722
DNA replication proteins [BR:
lbx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
lbkm_3722
DNA repair and recombination proteins [BR:
lbx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
lbkm_3722
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
tRNA_anti_2
HHH_3
Ferritin_C144_05
Motif
Other DBs
NCBI-ProteinID:
BBF44982
LinkDB
All DBs
Position
3904037..3907483
Genome browser
AA seq
1148 aa
AA seq
DB search
MDGSSKIKELVAKTKELGMDSIAITDHGVMYGVIDFYRAAKAEGIKPILGCEVYVAPNSR
FDKESGTGENRYYHLVLLAENNEGYSNLMKIVSKGFTEGFYYKPRVDMEVLQEYSSGIIA
LSACLGGEVASNLRQGFYEEAKVAALKFRDTFGENNFFLELQDHGIDVQQTVNQGLMRLH
KETGIPLVATNDIHYINADDAQAHDILLCIQTQKKVTDEDRMRYEGGQYYLKTPEEMANL
FPYAPEAITNTHDIAERCNVEITFGEYKLPRYDVPDGYTAWEYLNKLCYEGLEKRYENPG
QDLKDRLKYELDTINTMGFVDYFLIVWDFIKYARDNGIPVGPGRGSAAGSIVSYTLGITN
IDPIRFNLLFERFLNPERLTMPDIDIDFCYERRPEVIDYVVHKYGKDRVVQIVTFGTMAA
KAVIRDVGRVLDLGYAYVDHIAKMIPTELGITIEKALKQNSELRSEYESDEQAKFLLDMS
MRLEGLPRHTSMHAAGVVISNASADEYVPLSRSSDDTITTQFTMTTLEELGLLKMDFLGL
RTLTVIQNAVKLVNKHLPKDKQINIDDIDYNDKKVFDLISSGKCEGIFQLESAGMKSFMK
ELKPENIEDIIAGISLYRPGPMDFIPKYISGKNNQDSIQYECPQLEPILAPTHGCIVYQE
QVMQIVRDLAGYSFGRSDLVRRAMSKKKADVMAKERQNFVYGNEEEGVKGCINNGISEEV
ANHIYDEMTDFAKYAFNKSHAAAYAVVSYQTAYLKCYYPVEFMAALLTSVIDNSTKVSEY
IMNCRQIGIEILPPDINEGERQFSVSGNSIRYALSAIKGLGGPVIEAIVAERNENGNFTS
LKDFATRLSGKEVNKRTIESFIKAGALDSLPGTRKQKMMVYMQVLDAVNQERKTAISGQM
SLFDFATEEQKQELEITYPDVGEYPKEILLGFEKEVLGIYVSGHPLEEYEALWRKNITNT
TLDFAIDDETDTVKVKDGVEAVVGGMITSKVIKTTRNNSMMAFITIEDLYGVVEVIVFPR
DYEKYRAKLNEDSKVFIKGKITVEEDKPAKLICQSMLEFDQIPKETWIKFKSKEEFVNNE
QELYACLSKYAGKDSVVVYLESEKAIKRLPKLYNLTANKETIDFLKQKYGDNNVVIRELS
IENAMKMH
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
ttggatggttctagtaagattaaggaacttgttgcgaagacgaaggaattgggcatggac
agcattgcaattacggaccacggggttatgtatggcgttattgatttctatcgagctgct
aaggcagagggaatcaaaccgattttaggatgcgaagtttatgttgcgcctaattctaga
tttgataaggaatctggaacgggcgagaatagatattatcatttggttttattggcggag
aataatgagggttattcgaatctgatgaagattgtttctaagggctttacggaagggttt
tattataagcctcgtgttgatatggaggttcttcaggaatatagtagcggtatcattgca
cttagtgcttgtctcggtggcgaggttgctagtaatttaagacaagggttctatgaggaa
gcgaaggttgctgcgcttaaatttagggatacgtttggggagaataatttcttcttggag
ttacaggatcatgggatcgatgtacagcagacagttaatcaagggttaatgaggcttcat
aaggagactgggattccccttgtggctacgaatgatattcattatatcaatgcagatgat
gcgcaggcgcatgatatcttgttgtgtattcagacacagaagaaggtgactgacgaggat
cgtatgagatatgaaggtggtcagtattatttgaagacaccggaagagatggcgaactta
ttcccttatgcgccggaggcgattacgaatacgcatgatattgcggagcgttgtaatgtg
gagatcacgtttggtgagtataagttacctcgttatgatgtacctgatggctatacggct
tgggagtatttgaacaagctttgttatgaaggattagaaaaacgatatgagaacccagga
caggatcttaaagatcgtttaaaatatgagttagataccattaatacgatgggatttgta
gattacttcttgatcgtatgggattttatcaagtatgcgagagataatggaattccagtt
ggaccaggtcgtggtagtgcggccggaagtattgtttcttatacgcttggaattactaat
attgatccaattcgatttaacttactgtttgaacgtttccttaatccagagcgtttaacc
atgcccgatatcgatatcgatttttgttatgagagaagaccagaggtaattgattatgtt
gttcataaatatggtaaggatcgagtagttcagatcgttacatttggtacgatggcagcg
aaggctgttatccgtgatgttggccgagtacttgatcttggctatgcttatgtagatcat
attgcaaaaatgattccaacggaacttggaattacaattgagaaagcattgaaacagaat
tctgagttaagatcagaatatgagtcagatgaacaggcaaaattcttacttgatatgtcg
atgcgtttggaagggcttccacgtcatacttccatgcatgcggcaggtgttgttatcagt
aatgctagcgcagatgaatatgtaccattatcgagatcttcagatgatacgataacgaca
cagtttacgatgacgacattagaagaacttggattattgaaaatggatttcctaggttta
agaacacttacggtaattcaaaatgcagttaagttagtgaataaacatttgccaaaagac
aaacaaataaatattgatgacattgattataatgataagaaagtatttgatctgatctcc
tctggtaaatgtgagggtatcttccagcttgaaagtgcgggaatgaagagcttcatgaag
gaattaaaaccagagaatatagaagatatcattgccggtatttccttatatcgaccaggt
ccaatggactttattccgaaatacatttccggtaaaaataatcaagacagcattcagtat
gagtgcccacagttagagccgattcttgcgccgactcatggctgtattgtataccaggaa
caggttatgcagatcgtacgtgatcttgcaggatatagctttggacgaagtgatctggta
cgtcgtgccatgtcaaagaagaaagcagatgttatggcgaaagaacgtcaaaactttgta
tatggtaatgaagaagaaggcgttaagggctgtatcaataatggcatttcagaagaagtt
gcgaaccatatttatgatgagatgacagacttcgcaaagtatgcctttaataaatcgcat
gcggctgcgtatgcagtagtttcttatcagacagcttatttaaaatgttactatccagta
gagtttatggcagccttactgacaagtgttattgataatagtacaaaagtaagtgagtat
attatgaattgccgtcagattggaattgagatcttaccacctgatattaatgaaggggaa
agacaattctcagtatccggtaactcaatccgttatgcattatcagcaattaaaggtctt
ggtggtcctgtgatcgaagcgattgtggcagagagaaatgaaaatggaaactttacgtca
ctgaaagattttgcaaccagattatcaggaaaagaagtaaataagcgtaccattgaaagc
tttattaaggcgggagcattagatagtcttccaggcacaagaaagcagaagatgatggtg
tatatgcaagtattagatgcggtaaaccaagaacgtaagacggcgatatccggtcagatg
tcattgtttgattttgcaacagaagaacagaagcaagagttagagattacttatccagat
gtaggcgagtatccaaaagagattctattaggatttgagaaagaagtacttggtatctat
gtaagtggacatccactggaagaatatgaggctctttggagaaagaatattactaataca
accttggattttgcaattgatgatgagacagatacagttaaggtaaaagatggtgttgag
gcagtagtcggcggaatgatcacatcaaaagtaattaagacgactagaaataattcgatg
atggcctttattacgatcgaagatctttatggagtagttgaagttattgtattcccaaga
gattatgaaaagtatcgtgcaaaattaaatgaggatagtaaagtttttattaagggtaag
ataacagtagaagaagataaaccagcaaagttaatttgtcaatcaatgttggagtttgac
caaattccgaaggagacatggattaagtttaaaagtaaggaagaatttgtaaataacgaa
caagaattgtatgcatgtttgagcaaatatgctggaaaagattctgttgttgtctatttg
gaaagtgaaaaagcaataaaaagacttccgaaattatacaatttgacagcgaataaagaa
acaatcgactttttaaaacaaaaatatggtgacaataatgttgtcattcgtgaactgagt
attgaaaatgcgatgaaaatgcattag
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