Lachnospiraceae bacterium KM106-2: lbkm_3916
Help
Entry
lbkm_3916 CDS
T08927
Name
(GenBank) putative ATP-dependent DNA helicase YjcD
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
lbx
Lachnospiraceae bacterium KM106-2
Pathway
lbx03420
Nucleotide excision repair
lbx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lbx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
lbkm_3916
03430 Mismatch repair
lbkm_3916
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lbx03400
]
lbkm_3916
Enzymes [BR:
lbx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
lbkm_3916
DNA repair and recombination proteins [BR:
lbx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
lbkm_3916
MMR (mismatch excision repair)
Other MMR factors
lbkm_3916
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
Viral_helicase1
UvrD_C_2
AAA_30
AAA_11
AAA_12
ResIII
DEAD
AAA_22
DUF3553
MSSS
PcrA_UvrD_tudor
Motif
Other DBs
NCBI-ProteinID:
BBF45157
UniProt:
A0A7U6QL78
LinkDB
All DBs
Position
4120915..4122927
Genome browser
AA seq
670 aa
AA seq
DB search
MEYNKSQKEAILHNKGPMLVLAGPGSGKTLVITRRTKELVETYGVAPNKILVITFTKAAA
TEMKERYARLMGGNTGGVQFGTFHAIFFTILRYAYNYSGNNILREEQKSQFYREIVRKLQ
LEFDDEKEFISGVESEISLVKGDMIPLEHYYSINCSDDVFKKIYQEYENFLRRNNVIDFD
DMLVFTYELLKQRSDILALWQKRFEYILIDEFQDINSLQYKIVQMLAKPQDNLFIVGDDD
QSIYRFRGAKPEIMLNFEKDYPNAKRVLLDVNYRSTSTIVNNALRVIKNNTKRFPKKIHT
SHGKGDDLHIRLFDTLAQENQQIVDEIINYRKAGNQFSDVAILFRTNTQPRNLIEKLMEY
NIPFRMRDSIPNIYDHWIARNLIDYIKMALGNRDRAAFYQIMNRPKRYLSRECAPNPEID
FHQILSYYSDRPWVMERIQKFQYDLEMIKDMNPFSAIYYIRKAVNYEEYLEEYAQYRRIK
VEELLETLNEVQEASKEFRTFDAWFAHIEQYGEELKEQAMKRNDSSVDAVSLATMHSSKG
LEYKIVYIIDANEEITPHHKAVLDEDLEEERRMFYVAMTRAKEQLHIYSLKERYNKELDV
SRFVNEIYVDKDAMKPGAMVEHKTYGKGTVKAIKDGKITIQFNKLQMPKTLNVEYCVKNR
MLRILDSDKQ
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atggaatacaacaaatcacaaaaagaggcgatccttcataataaggggccgatgctggtt
cttgcaggccctggttcaggtaagaccttggttatcactagaagaacaaaggaattggtt
gagacctatggagtagcaccaaataaaatattagtcattaccttcacgaaggcagcagca
actgagatgaaggagcgatatgcaaggctgatgggtggaaatacaggaggagttcaattt
ggaacttttcatgctatcttttttaccatccttcgttatgcttataattattctggaaat
aatattttacgagaagaacagaaaagtcagttttatcgtgagattgtccgcaaactgcaa
ttagagtttgatgatgaaaaagaatttatctcgggagttgagagtgagatcagtctagta
aaaggagatatgattcctctagagcattattattccatcaattgctcggatgatgtattt
aagaagatctatcaagaatatgagaattttcttcgaagaaataatgtgatcgattttgat
gatatgctggtatttacttatgaattattaaaacagagaagtgatatcttggcgctctgg
cagaaacggtttgagtatattctgatcgatgagtttcaggatattaattcacttcaatat
aaaatcgttcaaatgcttgcgaagccacaggataatctatttattgtaggagatgatgat
cagtcgatctatcgattccgtggtgctaagccggagatcatgctgaactttgagaaagac
tatccaaatgcaaagcgagttctcctggatgtgaattaccgttctacaagtacgattgta
aataatgcgcttcgtgttattaagaataatacaaagcgttttccgaaaaagatccataca
tctcatggtaagggagatgatcttcatatcagactatttgatactcttgcacaagagaat
caacagatagtagatgagatcattaattaccgtaaggcaggaaatcagttttctgatgtg
gcaatattgttccgtaccaatacacagcctagaaatctgatcgaaaaactaatggagtat
aacattccattccgaatgagagattctattcctaatatctatgatcattggatcgctaga
aatttaattgactatattaagatggcattaggcaatcgagatcgcgcagcgttctatcag
atcatgaatcgtccgaaacgataccttagtagggaatgcgcaccgaatccagaaatcgac
tttcatcaaatactaagttattattcggatcgtccatgggtaatggaacgaattcagaag
ttccagtatgatcttgagatgatcaaagatatgaatccattctcagctatctactatata
cgtaaggctgtaaattatgaagagtatctggaagagtatgcgcaatatcgcagaattaag
gtagaagagctcctagagactttgaatgaggtacaagaggctagtaaggagtttaggacc
tttgatgcctggtttgcccatatcgagcagtatggcgaagaattaaaggaacaggcaatg
aagcgaaatgattcttctgtggatgcagtctcgttagcaacaatgcatagcagtaaggga
ttagagtataagatcgtatatattattgatgcaaatgaagagatcacgcctcatcataag
gctgttttagatgaagatctagaagaagagagacgaatgttctatgttgctatgacgcga
gcgaaagagcaacttcacatttactccctaaaagaacgttataataaagaactggatgta
tctcgatttgtaaatgaaatctatgttgataaagacgcgatgaagccgggagcaatggta
gagcataagacttatggaaaaggtaccgtaaaggcaataaaagacggaaagatcacgatt
caatttaataagcttcagatgccaaagacattgaatgtagagtattgtgtgaaaaataga
atgcttcggattttagattcggataaacaataa
DBGET
integrated database retrieval system
