Leadbetterella byssophila: Lbys_0092
Help
Entry
Lbys_0092 CDS
T01350
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
lby
Leadbetterella byssophila
Pathway
lby03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lby00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Lbys_0092
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lby03019
]
Lbys_0092
Enzymes [BR:
lby01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Lbys_0092
Messenger RNA biogenesis [BR:
lby03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Lbys_0092
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
ADQ15888
UniProt:
E4RSN8
LinkDB
All DBs
Position
complement(110395..111711)
Genome browser
AA seq
438 aa
AA seq
DB search
MQFSELNLNKPLLRALEDLQFSSPTPIQEKVFSVLMSGRDLAGIARTGTGKTFAYLLPLL
RMWTFSKDKLPQILVLVPTRELVMQVVESAKALSTYMSFDVVGVYGGVNMKSQAAELMQG
CDMVVATPGRFTDLAAAGVLKVKNIKKLVIDEFDMMLDLGFRPQLDLIFNKIPERRQNLL
FSATLSEEVGSLIGDIFKTPIIIEDDDIGTPIESILQKTYAVPNFKTKINLLDLLLGNDP
DMQKNLIFVAQKSAADLLFQELKSRGMESVEVIHSNKSQNYRFRAIKSFSDGEIKTLIST
DIGSRGLDIKGITHVVNMDVPTEKTDYVHRIGRTGRGGNSGTAISFVSPKEEEDFAEIEE
MYQLQLQRIPLPPYLEIEEGLLPFEMEHESIKVPTVKTDANIGAAFHEKLEKNKKVNKRR
DIEAEKKLKYGKSYRKGM
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgcaattcagcgaactcaatctgaacaagccactcttacgagctttagaggatttacaa
ttttcttctcctactcctattcaggagaaggtattctccgtcctcatgtcaggaagagac
cttgcaggtatagcccgtacgggcacaggtaaaacctttgcttacctccttcccttacta
agaatgtggacctttagcaaagacaaacttccacaaatcctggtattggtcccaacgaga
gagctagtaatgcaagtggtagaaagtgccaaagccttgagtacttacatgagttttgac
gtggtgggtgtttacggtggggtaaatatgaaatctcaagccgcagaactaatgcaaggc
tgtgacatggtggttgccacacccggcagattcacagatttagcggcagctggcgtccta
aaagtaaagaacatcaagaagttagtgatcgatgagtttgatatgatgttagacttaggc
tttcgcccacaacttgacctgattttcaataaaatacccgaaagaagacagaaccttcta
ttctctgctaccctatccgaagaagtgggatccttgattggagatatctttaagactcct
attattattgaagatgatgatataggaacaccaatagaaagtatcttacaaaaaacctac
gcagtaccaaattttaagaccaagattaacctcctggatctcctgcttggaaatgacccg
gacatgcaaaaaaacctgatttttgtagctcaaaagtcggcagctgatctacttttccaa
gaattaaaaagcagaggaatggaaagtgtagaagttatccattctaataaatctcagaac
tatagatttagagccataaaatctttttcggatggtgaaataaagactttaatctctacg
gacattggatctagaggattggatatcaaaggaatcacccatgtagtaaacatggacgta
cccactgaaaagacggactacgtgcataggataggtagaacagggagaggaggaaattca
ggcactgcaatttcatttgtaagtcctaaagaagaggaggattttgcagagatcgaagag
atgtaccaattgcaattacaaagaatacctcttcctccctatttagaaattgaagagggg
ttactaccttttgaaatggagcatgaaagcataaaagtacctaccgtcaagaccgatgcc
aacattggagctgcttttcacgaaaagctggaaaagaacaagaaggtcaacaaaagaaga
gacattgaggctgaaaagaaattaaaatacggaaagtcataccgtaaaggaatgtaa
DBGET
integrated database retrieval system
