Leadbetterella byssophila: Lbys_0676
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Entry
Lbys_0676 CDS
T01350
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lby
Leadbetterella byssophila
Pathway
lby03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lby00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Lbys_0676
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lby03019
]
Lbys_0676
03009 Ribosome biogenesis [BR:
lby03009
]
Lbys_0676
Enzymes [BR:
lby01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Lbys_0676
Messenger RNA biogenesis [BR:
lby03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Lbys_0676
Ribosome biogenesis [BR:
lby03009
]
Prokaryotic type
rRNA helicases
Lbys_0676
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
CMS1
AAA_30
AAA_19
SNF2-rel_dom
Helicase_RecD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ADQ16438
UniProt:
E4RZ99
LinkDB
All DBs
Position
complement(727354..729213)
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AA seq
619 aa
AA seq
DB search
MCLIYPLRSLHSAKGILPFIFFTPSEQKTDSVRDVHVRACRYRLKNYSNKKSGLLSVSNL
QYIGMQTLKFSELPISDYIVKAVEEMGFTESTPIQTAAIPVVMSGRDVIGQAQTGTGKTA
AFGIPAIEHVNAEDRNTQVLILCPTRELALQVKEQLTLLAKYKKGLLVSAIYGGESYERQ
FANLKRGTQIVVGTPGRIMDHIEKKTLKLDNISMVILDEADEMLNMGFREDIEQILSFAK
EDRQTVLFSATMSKEILNITKKFQNDPEIVKVTRKEITNTNIEQSYYLVKKEAKFELMVR
LIDVHDLQLMLVFCNTKSKVDEIVEELQANGYAAEGLHGDMRQAARNQVMNKFRNGNTKI
LVATDVAARGIDVSGVDAVINYDLPMDLEYYVHRIGRTGRAGKLGKAFLFITKRDRSRMR
DLEQYTKVAIPQGKIPTSADLEKSRINKFVEKIRENIVEDTNPAFEKIVDQLKEEGFYTH
QIISALMQMQMGAVRKSSFRDEDIADEARGRNERFASKERGNRREFSRDRKPSFGGGRSA
EEGMTRLFINLGRKDNVSPNHIVGAIASEAKIPGRVIGQIDMYDKFSFVEVPQRDVRKVI
EGMKGKTINQREANIEVAK
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
ttgtgcctgatttatccgttaaggtctctgcattcggcaaaaggaattctaccttttatt
ttttttaccccttcagagcagaaaacggattcggtccgtgatgttcacgtaagggcgtgt
cgctatcgcctcaaaaattattcaaataaaaaatctggattgctcagcgtaagcaatcta
cagtacattggtatgcaaacattaaagttttcagaacttcctatttcagattacatcgtt
aaagccgtagaagaaatgggctttactgagtctactcctattcaaacggccgctattcct
gtagttatgtcaggcagggacgtgataggacaagctcaaaccggtacaggtaagacagca
gcatttggtattccagcaattgagcacgttaatgcagaagacagaaacacacaggtattg
attctttgtcctactagagaattggctttgcaggttaaagagcaattgacacttctagca
aaatataaaaaaggtcttctggtttcagccatctacggtggagaatcttatgaaagacaa
ttcgctaaccttaagagaggaactcagatcgtggtgggtactccgggtagaatcatggac
cacatcgagaagaaaaccttgaaattggataatatttcaatggtgattttagatgaggct
gatgagatgttaaacatgggctttagagaagatatcgaacagatattatcttttgccaaa
gaggacagacaaaccgttctattctcagctaccatgtctaaggagattcttaacatcact
aagaagttccaaaacgatcctgaaatagttaaggttaccagaaaagaaatcactaacaca
aacattgaacaatcttactatttggttaaaaaagaagccaaatttgaattgatggtaaga
ttaatagatgtgcatgatctacagttgatgctagtattctgtaatacgaaatcaaaagta
gacgagatcgtagaagaacttcaagctaacggttatgcagcagaaggtctacacggggat
atgcgccaagccgcacgtaatcaagtcatgaacaaattccgtaatggaaataccaaaata
ttagttgccacggacgttgcagccagaggtattgacgtgagcggagtggatgccgtaatc
aactatgacctccctatggacttggaatactacgttcaccgtatcggtagaaccggcaga
gcgggtaaattaggtaaagcattcttattcatcactaaaagagatagaagcagaatgcgc
gatttggaacaatacaccaaagtagccattccacaagggaaaatacctacctctgctgac
cttgagaaatctcgtatcaacaaattcgtagaaaagatcagagaaaatattgtagaagat
actaaccctgcttttgaaaagatcgtagatcaattgaaagaagaaggtttctacacccac
caaatcatctctgcccttatgcaaatgcaaatgggtgccgttagaaagtcaagctttaga
gatgaagacattgctgatgaagctcgcggaagaaatgaaagatttgcttctaaagaaaga
ggtaacagaagagagttctcaagagacagaaaaccttcattcggaggtggaagatctgca
gaagaaggaatgacacgtttattcatcaatttaggtagaaaagataacgtttctcctaac
cacatcgtaggagctatagcttctgaagctaagattccaggacgtgtaattggtcaaatt
gatatgtatgataagttttctttcgtagaagttcctcaaagagatgtacgaaaagtaatc
gagggaatgaaaggaaaaaccatcaatcagcgagaagccaatattgaggttgcaaaataa
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