Leadbetterella byssophila: Lbys_2620
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Entry
Lbys_2620 CDS
T01350
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
lby
Leadbetterella byssophila
Pathway
lby03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lby00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Lbys_2620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lby03021
]
Lbys_2620
03400 DNA repair and recombination proteins [BR:
lby03400
]
Lbys_2620
Enzymes [BR:
lby01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Lbys_2620
Transcription machinery [BR:
lby03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Lbys_2620
DNA repair and recombination proteins [BR:
lby03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Lbys_2620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RNA_pol_Rpb2_5
YqfD
Motif
Other DBs
NCBI-ProteinID:
ADQ18282
UniProt:
E4RZN9
LinkDB
All DBs
Position
2925318..2929175
Genome browser
AA seq
1285 aa
AA seq
DB search
MKLTETGRKSFASVQPALEYPDFLDIQLQSFTEFFQIDTPAESRRAEGLYQTFMDNFPIA
DSRENYVLEFVDYTIDQPKYSVDECIDRGLTYSVPLKAKLKLTCNDADNEDFETIEQEVF
LGNIPYMTSRGSFVINGAERVIVSQLHRSPGVFFSMSKHTNGTKLYSARVIPMKGSWIEF
STDVNNVMYAYIDRKKKFPVTTLLRSIGFGTDKEILDLFGLSEEIAATRDNLKQVVGRRL
AARVLKTWTEDFVDEDTGEVVSIDRNEVILERDSVITEDDVELILSTELKSVILHREDAN
VSEYNIIYNTLQKDSSNSEKEAVEQIYRQLRNTEAPDEATAREIIQGLFFSDKRYDLGEV
GRYRVNTKLNLDTPLETRVLSKEDIISIVKYLIGLINSKAVVDDIDHLSNRRVRTVGEQL
SGQFGVGLARMARTIKERMNVRDNEDFKPVDLINARTLSSVINSFFGTNQLSQFMDQTNP
LAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCTIETPEGPNIGLISSLCTYAK
INSMGFIETPYNKIEDGKLTGKIEYLTAEEEDGKNIAMATADVNPDGSFTVDTLKCRYEG
DFPMKSPDEIEYMDIAPNQIVSIAASMIPFLEHDDANRALMGSNMQRQAVPLLRPEAPIV
GTGLEGKLARDSRTLVVAEGDGVIDYVDAEKIVVNYDWTDNQKLVSFDTNFTTYKLIKFR
RTNQDTCINLRPIVLKGQRVKKGQILVEGYATQGGELALGRNLQVAFMPWQGYNFEDAIV
ISERVVREDIFTSIHIEEFDLEVRDTKRGEEELTSEIPNVSEEAVKNLDENGIVRVGTHI
KEGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASKKAPPSLRGVIIDTKLFSRP
SKEERLKHKEEVKRLMVKHSKDLSALKEVMIDKMVTLLDGKTSNGVKHKFGEELISKGVK
FNRSNITNNLFPEKNPFVDESTYNVPEEANLLGDIILEGWTNDAETNSLLVQLVKNYLTR
RSEIIGVFKREKFVLEVGDELPAGIVKLAKVYIAKKRKLKVGDKMAGRHGNKGVVARIVR
DEDMPFLEDGTTMDIVLNPLGVPSRMNIGQLYEVCLGWAGKKLGRKYATPIFDGASSEEV
AAELKEAGLQEFGRTYLYNGLTGERFDQPTTVGIMYMLKLGHLVDDKMHARSIGPYSLIT
QQPLGGKAQFGGQRFGEMEVWALEAFGASHVLREILTLKSDDVLGRAKAYEAIVKGENLP
KASIPESFNVLVHELRGLALEITLN
NT seq
3858 nt
NT seq
+upstream
nt +downstream
nt
ttgaaattgacagaaaccggaaggaagtcctttgcaagtgttcagcccgcgttagaatat
cctgattttctggatatccaattgcaatcattcacagagtttttccagattgatacacct
gctgaaagccgcagagcggaaggcttgtatcaaactttcatggataacttcccgattgca
gactcgcgcgagaactatgtgctagagtttgtggattacaccattgaccagccaaaatac
tctgtagatgagtgtatcgatagaggtttgacgtattctgtaccattgaaggccaaatta
aaattgacctgtaatgacgcagacaacgaggattttgagaccattgagcaggaggttttc
ttaggaaacatcccttacatgacctcaagaggttcttttgtgattaacggagcagagcgt
gttatcgtttctcagcttcaccgttctccgggtgtgttcttctctatgagtaagcataca
aacggaacgaagttgtattctgcacgtgtgatcccaatgaaaggatcttggatcgaattc
tctactgacgtgaataacgtcatgtatgcgtacattgatcgtaagaagaagtttccagtg
actacactacttcgttctattggatttggaacggataaagaaatcttggatctcttcgga
ctatctgaagaaatcgcggctactcgtgataacttgaagcaggttgtgggtagaagatta
gcagcaagggtgttgaaaacttggacagaagacttcgtggatgaggatactggtgaagta
gtatctattgatcgtaacgaggttatcttggagagggattccgttatcactgaggacgat
gtagaattgatccttagcacagaattaaagtcggttatccttcacagagaagatgccaac
gtttctgagtataacattatctacaatacattacaaaaagatagctctaactcggagaag
gaagcggtggaacaaatctatcgtcaacttcgtaacactgaagctccggatgaagctaca
gcgagagagattatccaaggtctgttcttctctgacaagcgttatgacttaggagaagta
ggacgttacagagtaaataccaaattgaatttggatactccactagagactagagttctt
tctaaagaggatatcatctctatcgtgaagtatttgatcggtttgataaactctaaagca
gtagtggatgatattgaccacttatctaaccgtcgtgtacgtaccgtaggagagcagttg
tccggacagtttggtgtaggtctagcccgtatggccagaaccatcaaagaaagaatgaac
gttagagataacgaagatttcaaaccggtagatttgattaatgcaagaaccttgtcttct
gtaatcaactcgttctttggtactaaccagttgtctcagttcatggatcaaacgaaccca
ttggcggagatcactcacaaacgtcgtctatccgctttaggacctggtggtctatccaga
gaaagagcaggtttcgaggttcgtgacgttcactatacgcactatggtcgtctttgtact
attgaaactcctgaaggtccaaacattggattgatttcttcgctttgtacttatgcgaaa
atcaactctatgggcttcatcgagactccatataacaagattgaagacggtaagttgacc
ggaaaaatcgaatacctaacggctgaagaggaagatggtaagaacattgccatggctact
gcagatgtaaatcctgatggaagctttacagtagatactttgaaatgtcgttacgaaggt
gacttcccaatgaagtctccagacgagatcgagtatatggacatcgctcctaaccagatc
gtatctattgcggcatctatgattcctttcttggagcatgatgatgctaaccgtgctttg
atgggatcgaacatgcagcgtcaagcagtgcctttacttcgtcctgaagctccaatagta
ggtactggtttggaaggtaaattagctcgtgactccagaacgctagttgtagcagaagga
gacggggtgattgactatgtagatgctgagaagatcgtagtgaactatgactggacagat
aaccagaaattagtaagcttcgatacgaacttcactacttataaattaatcaagttccgt
agaactaaccaggatacatgtattaaccttcgtcctattgtattaaaaggacaaagagtt
aagaaaggacaaatccttgtagaaggttatgctactcagggtggtgaacttgctctagga
cgtaaccttcaggtagcgttcatgccttggcaaggttataactttgaggatgccatcgta
atctctgaacgtgtggttcgtgaagatatctttacttccatccacattgaggaatttgac
cttgaagtacgtgatacgaagaggggagaggaagaattaacttctgaaattccaaacgta
tctgaagaagcagttaagaacctggacgaaaacggtatagtacgtgtaggtactcacatc
aaagaaggtgatatccttatcggtaagattactcctaaaggagagtctgatccaactccg
gaagagaagctattgagagctatcttcggtgataaagccggtgatgtgaaagatgcttct
aagaaagcacctccatctctaagaggggtgatcattgataccaaactcttctctagacct
tctaaagaagaacgtttgaaacacaaggaggaagttaaacgtctgatggtaaaacacagc
aaagacctttctgccttgaaagaagtaatgattgataaaatggtaactctattagacggt
aaaacttctaatggtgtgaaacataaattcggagaagaactaatctctaaaggagttaag
tttaaccgttcgaacattacgaataacctattcccagagaaaaacccatttgtggatgaa
agcacttataacgtgcctgaagaagcaaacttattgggtgatattatcttggaaggctgg
actaatgatgctgaaacgaacagccttttggtacaattagtgaaaaactatttgactaga
agatctgaaatcatcggtgtgttcaagagagagaaatttgttcttgaagtaggtgatgaa
cttccagcgggtatcgttaagctagctaaggtttacatcgctaagaaacgtaaactgaaa
gtaggggataagatggccggtcgtcacggtaacaaaggggttgtggctcgtatcgtaaga
gacgaggatatgccattccttgaagacggaactaccatggacatcgtactaaacccacta
ggtgtaccttcccgtatgaacatcggacagctgtacgaggtttgtttaggatgggccgga
aagaagctaggtcgtaaatatgctactccaatctttgatggtgcttctagcgaagaagtg
gcagctgagttgaaagaagcaggtctacaagaattcggtcgtacatacctatataacggt
ttaacgggtgagcgctttgaccagcctacaacagtgggtatcatgtatatgttgaagcta
ggtcacttggtagacgataaaatgcacgctcgttctatcggaccatactctcttattact
caacaacctctgggtggtaaagctcagtttggtggtcagcgttttggagagatggaggta
tgggctctggaagccttcggtgcgtcacatgtattaagggagatccttacgctgaaatcc
gatgacgtactcggaagagcgaaagcatacgaagccatagttaaaggtgaaaacttacct
aaagctagcattccggaatcgtttaacgtattggtgcacgaactaagaggacttgcacta
gagatcactcttaattaa
DBGET
integrated database retrieval system
