Leishmania braziliensis: LBRM_09_0800
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Entry
LBRM_09_0800 CDS
T01113
Name
(RefSeq) putative cleavage and polyadenylation specificity factor 30 kDa subunit
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
lbz
Leishmania braziliensis
Pathway
lbz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lbz00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
LBRM_09_0800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lbz03021
]
LBRM_09_0800
03019 Messenger RNA biogenesis [BR:
lbz03019
]
LBRM_09_0800
Transcription machinery [BR:
lbz03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
LBRM_09_0800
Messenger RNA biogenesis [BR:
lbz03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
LBRM_09_0800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_CCCH_4
zf-CCCH
zf-CCCH_2
Torus
zf-CCCH_4
zf-CCHC
zf-CCCH_3
zf-CCHC_2
zf-CCCH_9
Motif
Other DBs
NCBI-GeneID:
5413172
NCBI-ProteinID:
XP_001562694
UniProt:
A4H5Q3
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Position
9:complement(288371..289435)
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AA seq
354 aa
AA seq
DB search
MFVDDAAGTHFDFEDTLPKEQPRTEKKLEICQDFQRGRCRLGDACPQRHIISAYRTVQTK
VCKHWLRGACVNGDNCLYLHEYDNRYVPQCAFFERVGECTNPECPFLHTKPNESQPECAA
YRRGFCPLGPKCRLRHVKRESACPYYLAGFCPLGPRCPLGHPIQERYDRDAVSKRILAKM
IVERADDPTFNRSATCYRAGCFDPGHLAPDCPGPQHSVLHKALGEIQEPGQPTGALESTG
RGGGGGSHRRCFLCDQEGHTVKDCPMNTHRNQQRGGGSGGPGAPHNSASSAAMGNRRRLR
REGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGFGAGGGRRRPGRDHY
NT seq
1065 nt
NT seq
+upstream
nt +downstream
nt
atgttcgtggacgatgccgccgggacgcactttgacttcgaagacacgctgcccaaggag
cagcctcggacagagaagaagctcgaaatctgccaggatttccagcgcggccgctgccgt
cttggcgacgcctgcccgcagcgccacattatttccgcctaccgcaccgtccagacgaag
gtgtgcaagcactggctgcgtggcgcctgcgtgaacggggacaactgtctttatcttcac
gagtacgacaaccgctatgttccacagtgcgccttcttcgagcgcgtgggtgagtgcact
aacccggagtgccctttcctccacacgaagccgaacgagtcacagccggagtgcgccgcg
taccgccgcggcttctgcccgctgggccccaagtgccgcctccgacacgtgaagcgagag
tcggcgtgcccatactacctcgctggcttctgccctctaggcccacgatgtccgctgggg
catcccatccaagagcgctacgaccgcgacgccgtttcgaagcgcatcctggccaagatg
attgtggagcgcgccgatgacccaaccttcaaccgcagcgcaacttgctatcgggctggc
tgctttgaccccggccatctcgccccggactgtcctggtccgcagcacagcgttttgcac
aaagctcttggcgagattcaagagccggggcaacccactggcgccttggagagcactggg
cgtggcggtggtggaggctctcaccgccgttgcttcttatgtgaccaggagggccacacg
gtgaaagactgtccaatgaacacacaccgtaatcagcagcgcggcggagggagtggcggc
cctggcgccccacacaacagtgccagcagtgctgcaatgggtaaccgacggcgcttgcgg
cgagaaggcggtgccggtggtggtggtggtggtggtggtggtggtggtggtggcggtggt
ggtggcggtggtggtggcggtggtggtggcggtggtggtggtggtggtggtggtggtttc
ggtgccggaggcggtcgccgacgccccggtcgtgaccactactaa
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