Leishmania braziliensis: LBRM_21_1700
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Entry
LBRM_21_1700 CDS
T01113
Name
(RefSeq) putative RNA helicase
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
lbz
Leishmania braziliensis
Pathway
lbz03013
Nucleocytoplasmic transport
lbz03015
mRNA surveillance pathway
lbz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lbz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
LBRM_21_1700
09122 Translation
03013 Nucleocytoplasmic transport
LBRM_21_1700
03015 mRNA surveillance pathway
LBRM_21_1700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbz03019
]
LBRM_21_1700
03041 Spliceosome [BR:
lbz03041
]
LBRM_21_1700
Enzymes [BR:
lbz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LBRM_21_1700
Messenger RNA biogenesis [BR:
lbz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
LBRM_21_1700
Spliceosome [BR:
lbz03041
]
Complex C
Other components
EJC/TREX
LBRM_21_1700
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
LBRM_21_1700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
CMS1
EH_Signature
Motif
Other DBs
NCBI-GeneID:
5415435
NCBI-ProteinID:
XP_001564872
UniProt:
A4HC04
LinkDB
All DBs
Position
21:complement(580799..582040)
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AA seq
413 aa
AA seq
DB search
MGVGMGTHSAVALGGFQDFCLKSELANAIRENGFEHPSEVQHQALPKAMLGADILAQAKS
GMGKTAVFVFALLEQVEKAPQGQKPYCQAVVLVHARELAYQIEQEFKRFSKYLSYATTGV
FFGGIPEDENVKQLKKEVPAIIVGTPGRMKALIQAKAFDTTRVKWFVVDEFDRCLEDVKM
RRDVQEIFMKLPKEKQVMMFSATMTDELRDVAKKFMKDATEIYVDQRAKLTLHGLAQFYM
NVTEVEKTRRLAEILDAVEFNQAIIFTSSVERCEALSRQLQQMKFPSQAVHSRMSQEERL
RVYENCKANNTRIMVATDLFGRGVDFDRINLVVQYDMASEADSYLHRVGRAGRFGTKGLT
IAFITTDEKEIKRENRTYTDGNIMKEVQERFEMKVEELMDIKAQLNESQYMNK
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
atgggcgttggaatgggcacccacagcgccgtcgccctcggtggctttcaggacttttgt
ctgaagagcgagctcgcgaacgccatccgtgagaacggcttcgagcacccgtcggaggtg
caacaccaggcactgcccaaggcgatgctcggcgctgacattctcgcccaggccaagtcg
ggtatgggcaagacggctgtgttcgtctttgcgctgctggagcaggtggagaaggcgccg
cagggacagaagccgtattgccaggccgtcgtactggtgcacgcccgcgagctggcctac
cagatcgagcaggagttcaagcgcttcagcaagtacctctcgtatgctaccaccggcgtc
tttttcggcggcatcccggaggacgagaacgtgaagcagctgaagaaggaggtgccggcg
atcatcgtcggtacgccgggccgcatgaaggcactcatccaggccaaggcctttgacacg
acacgcgtgaagtggtttgtcgttgacgagtttgaccgctgcctagaagacgtgaagatg
cgccgtgacgtgcaggagatcttcatgaagctgcccaaggagaaacaagtgatgatgttc
tctgccacgatgacggatgagctgcgtgatgtggcgaagaagttcatgaaggacgcaaca
gagatctacgtggatcagcgtgcaaagctgaccctacacggcctggcacagttctacatg
aacgtcacggaggtggagaagacgcgccggctggcggagatccttgatgccgtggagttc
aaccaggcaatcatcttcacatcctctgtggagcgctgcgaggcgctgagccgccagctg
cagcagatgaaattcccctctcaggccgtgcactcccgcatgagccaggaggaacgccta
cgcgtgtacgagaactgcaaagcgaacaacacccgcatcatggtggccaccgacctcttc
ggccgcggcgtcgactttgaccgcatcaacctcgttgtgcagtacgacatggcctccgag
gccgacagctaccttcaccgcgtcggccgcgctggtcgctttggtacgaaggggctgaca
atcgccttcatcacgacagacgaaaaggagatcaagcgcgagaaccgcacctacacggat
ggcaacatcatgaaggaggtccaggagcgctttgagatgaaggtcgaggaactgatggac
atcaaagcccagttgaatgagagccagtacatgaataagtaa
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