Leishmania braziliensis: LBRM_23_0600
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Entry
LBRM_23_0600 CDS
T01113
Name
(RefSeq) putative 5'-3' exonuclease XRNC
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
lbz
Leishmania braziliensis
Pathway
lbz03008
Ribosome biogenesis in eukaryotes
lbz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lbz00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
LBRM_23_0600
09123 Folding, sorting and degradation
03018 RNA degradation
LBRM_23_0600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lbz03021
]
LBRM_23_0600
03019 Messenger RNA biogenesis [BR:
lbz03019
]
LBRM_23_0600
03009 Ribosome biogenesis [BR:
lbz03009
]
LBRM_23_0600
03016 Transfer RNA biogenesis [BR:
lbz03016
]
LBRM_23_0600
Transcription machinery [BR:
lbz03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
LBRM_23_0600
Messenger RNA biogenesis [BR:
lbz03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
LBRM_23_0600
Ribosome biogenesis [BR:
lbz03009
]
Eukaryotic type
Pre-60S particles
RNases
LBRM_23_0600
Transfer RNA biogenesis [BR:
lbz03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
LBRM_23_0600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
Motif
Other DBs
NCBI-GeneID:
5415706
NCBI-ProteinID:
XP_001565132
UniProt:
A4HCS1
A0A3P3Z7B9
LinkDB
All DBs
Position
23:194064..197261
Genome browser
AA seq
1065 aa
AA seq
DB search
MGVPLLLTWLRKRFADCFMPADSAVTNYIRESTDNLFIDLNSFLYQAATIITATHRSHRF
SSVDEVEDVVLRKLFDLLDDLVSNLVQPKALVYIAVDGVSPLGKMSQQRARRRRGARRQP
SAWPSSSFHHHEPAGNINDLWDSNCISVGTRFMAKVTEALHFYAVSRTERINAKRLREER
VRIASADASVDSAARDSAGLPYAFPFLNIIVDDVLRPGEGENKIAEFIRRIRADSSYGPN
TSHVICSSDTDVTVTSLILHEPRIHVLRYEPPASLGGRPPMKTQPPPQHHHHHRNHHGHV
RFSSHPHRGGGPSLHGPRRVDGRGGHAHRGPPRSSPGHCTGAAAQPSHVKDSWLSTFFSI
HVFRQRLREILHMSPGDDTATAVADAAVSPVDAEEATLTFEHALHDVVFVLLLFGNDFLP
TIGGSIQEGTLDALLSLLATDFVPRGRTLVNPATNHIQFASARYLLSRLAELPGKAKRGG
SEGPLQVHNGGCGALEWGFTDEKEAKAHEPTFVERQQRREKQHESMCYCYWTMLQWALQY
SAGIVEHWGCYYPYGRAPPLSKLATYCGVLSYDALGEIARRRLEVNAAAGRVARRIDGNP
DNAAEEEDDDDGMDGLPMPALQTGETNTAMIDAAERGKPTDVMVQLLILIPPNSVTLLPT
VFRHHYKEIEAAVQAPVEELNLVSIGSWCEEKKRCLSEEERTRFTAYQFFASDANLGTAE
APFPAQDITFSSYWDGPAVEAELAALRVNTKAAASGAVGTLVTASAMSSASAAGLQNKAA
SFFSLGRRPTPGTSSNGGAAALLAAVNITSAPASPPPVPTTAEIETPSTETPASALTEAT
PTLQQQTQPVRLRHPAGDYVLWVIRCEALQDALMVKALGAMHGNRFCVGSYVPLVEQDAV
LSRSSGPRQEVRLQFRLAVAPMITDTTYAARLLSGYKEPAVVGMRERIVEARKEEADRAD
PWKQLDKMQTLRQERKRSRDIESENASSECELKRELAHAAPASTDVYAQVLPEVELQEQD
QGSVGTVDSTTEADDAEALLQLRMAEARRRLMALKAARQAAQQDE
NT seq
3198 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtaccgctgctcttgacatggcttcggaagcgctttgctgactgcttcatgccg
gccgacagcgcagtcaccaactacattcgcgaaagcaccgacaacctttttatcgatctc
aactccttcttgtaccaagctgccaccattatcacagcaacccaccgttcgcaccgcttc
agctccgtcgatgaggtggaggatgtagtgctgcgcaagctgtttgacctcctcgacgac
ctggtctcgaacctcgtccagcccaaggcactggtgtacatcgcggtggatggggtgtcg
ccactgggcaaaatgtcgcagcagcgtgcgcggcggcgtcgtggggcgcgccggcagccg
tccgcctggccgtcgtcgtctttccaccatcacgagccggcgggcaacatcaatgacctg
tgggatagcaactgcatcagcgtcgggacgcgcttcatggcgaaagtcacggaggcgttg
cacttttacgctgtgagcaggacagagaggatcaacgcgaaacgacttcgcgaagagcgg
gtccgcatagctagcgccgatgcgtcagtggactccgccgcccgcgactctgctggtttg
ccgtacgcattccccttcctcaacatcatcgtcgacgatgtcctacgccccggcgagggc
gagaacaaaattgccgagttcatccgccgcattcgcgctgattcgagctacggccccaac
acgtcgcatgtcatctgcagctctgacacagacgttaccgtgacaagcctaatcctgcac
gagccacgtatccatgtcctgcgctacgagccgccggcttctctgggaggtaggccgccc
atgaagacgcagccaccaccccagcatcaccaccaccaccgcaaccaccacgggcacgtg
cgcttctcctctcatccgcatcgcggcggtggtccttcgttgcacgggccgcgtcgggtc
gacggacggggcggccatgcccaccgtgggccaccacgttcctctccgggtcactgcacc
ggtgccgctgcgcagccatcgcatgtgaaagatagctggctctctaccttctttagcatt
cacgtctttcgccagcgacttcgcgaaatccttcacatgtcacccggcgacgacactgct
acagctgtcgcggacgctgctgtgtctccggtggacgccgaggaagccaccctcaccttt
gagcacgcgttgcacgatgttgtctttgtgctgctgctcttcggcaacgacttcctgccc
accatcggcggcagcattcaggagggcacattagacgcacttctctcactactggcgacc
gattttgtgccgcgtgggcggaccctggtgaacccggcaacaaaccacattcagtttgcg
tccgcccgctacctgcttagccgcctggcggagctgcctggcaaggcgaaaaggggtgga
agtgaaggtcctctgcaggtgcacaacggtggctgtggcgcgctggagtggggcttcaca
gacgaaaaagaagcgaaggcgcatgagcccacctttgtcgagcggcagcagcgacgtgag
aagcaacacgagtccatgtgctactgctactggacaatgctgcagtgggcgctgcagtac
agcgccggaattgtggagcactggggttgctactacccatacggcagggcaccccctttg
tcaaaactagctacgtactgcggtgtgctctcctacgatgcacttggagagatcgcgcga
cggcgactagaagtgaacgccgctgctggacgcgttgcgaggcgcatcgatggcaacccc
gacaacgccgccgaggaggaggacgacgacgacggcatggacgggcttccgatgccagcg
ctgcagaccggcgagactaacacggcgatgatcgacgcagcagagcgtggcaagccaacg
gatgtaatggtacagctgctgatccttatccctccgaacagtgtgacgctgctgcccact
gtcttccggcaccactacaaggagatcgaggcggctgtgcaggcacccgtggaagagctg
aacctagtgtccattggctcctggtgcgaggagaaaaagcgctgtctcagcgaagaagag
cggacgcgcttcacagcgtaccagttcttcgcctccgacgctaaccttggcaccgcagaa
gccccatttcccgcgcaagatatcaccttcagctcctattgggacgggcctgcggtcgaa
gctgagttggcggcgctgcgagtgaatacgaaggcagcggcgagtggtgccgtcggcacc
ctcgttactgccagcgctatgtcgtctgcctcggcggcgggtctgcagaataaggccgcc
tcctttttcagtttgggtcgtcggccgactcccggcacctcaagcaatggcggcgcagcc
gcactcttggctgccgtcaacatcactagcgcacctgcctcgccgccgccggtgccaacc
acggcggagatcgagactccaagcacagagacacctgcgagcgcgctaaccgaagcaacc
ccgacattgcaacagcaaacacagcccgtaaggctccggcacccagcaggcgattacgta
ctctgggtaattcgatgcgaggctctgcaagatgcactaatggtcaaggcgttgggcgcg
atgcacgggaaccgcttctgcgtgggcagctacgtgccgcttgtggagcaggacgccgta
ctcagccgcagcagcgggccacggcaggaggtgcggctgcagtttcgtcttgctgtggcc
ccaatgatcacggacacgacatacgcggcgcgcctgctctcggggtacaaggaaccagca
gtggtcggcatgcgggaacggatcgtggaggcgcggaaagaggaagctgaccgggccgat
ccgtggaaacagttggacaagatgcagacgctgcgacaagaacgcaagcgctcccgcgac
atcgagagcgagaacgcgtccagtgaatgtgagctgaagcgcgaacttgcgcacgctgca
ccagcgagcaccgacgtttatgcgcaggtactgccggaggtagagctgcaggagcaagac
caggggtcggtcggcacggtggactcgacaactgaggcagacgatgcggaagcgcttctg
cagcttcgcatggcggaagcgcggcggcgattaatggccttgaaagctgctcgacaggcc
gcgcaacaggacgagtga
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