Leishmania braziliensis: LBRM_23_1790
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Entry
LBRM_23_1790 CDS
T01113
Name
(RefSeq) conserved hypothetical protein
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
lbz
Leishmania braziliensis
Pathway
lbz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lbz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
LBRM_23_1790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbz03019
]
LBRM_23_1790
03041 Spliceosome [BR:
lbz03041
]
LBRM_23_1790
Messenger RNA biogenesis [BR:
lbz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
LBRM_23_1790
Spliceosome [BR:
lbz03041
]
Complex B
Other components
Prp19-related factors
LBRM_23_1790
Complex C
LBRM_23_1790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_Syf1_CNRKL1_C
Suf
HAT_PRP39_C
NRDE-2
HAT_Syf1_M
UTP6_C
Motif
Other DBs
NCBI-GeneID:
5415825
NCBI-ProteinID:
XP_001565250
UniProt:
A4HD39
A0A3P3Z7G9
LinkDB
All DBs
Position
23:701793..704177
Genome browser
AA seq
794 aa
AA seq
DB search
MDSDPRVSALQWEVTKEASASPKTWAELARTTAAAAATNPVERVNAVTLVYERALRAFAS
SYKLWRAYIRYRQQETRRLCGPSEWFQAMREVYERALAELPTMPMLWVDYMEFVVASEVP
RVTMTRHILARALAALPATQHHHLWRVAKRWCAMPVVPSATVQAVWRLYLSFQRSLHARR
EYFQVLVQKGDFNAFLQECVHLGLPNKLDKGAVEQRDLLFGDVSFWETVQTALQSKGWRF
TGDIDPLRELVALGKQRCASPVELSMAFAIFLYGQGNMREGRQELQGLLDAAPEAQTLTS
LYHLAVEVEDQLVESFAVDPNLKHLDDATYKRVVQHLFGDGDPLSHLERLVHDFPLLLNQ
AQLRNSPHNAALWLKRVELVQEDVYAGRSTFDDLVALYRQAIQQCTAGMSRVDGAAAQLF
FSCAQALIRGGKLDSATLVLSEGAWYVPFTSAALNVQLLGLLVEVQLMSSASPLSVRDAL
AERLTSGARSGGSKRGRNGLLQSNAALPHVVHHPHAWILWCDVCAAYDATNATAWQSLVE
TLSSSPAFSAEAACYVAHKAYVCRQESIAVMVLERAVAATRQQPTAQLFVLEQYLSFLYV
RDGGKVPLHQFREVFSLVQQATPVAIRTAPSAVIDLHVSCAYMEAAIGLYGTAVRMMQEI
SLVAVAALRGRDEYLRILQAILEHSITFTEQRKGYDAVRKYCGALVQRLQHALLLQRVAL
HWASIEKRSGNTAQAHLILDACGDSQDPSTEHGEVYWRLWESLCTSVEEFEKVARRRQQA
SMRFGKRESTKGSG
NT seq
2385 nt
NT seq
+upstream
nt +downstream
nt
atggacagtgacccacgagtgagcgccctacagtgggaggtgacgaaagaggcctcggcg
tcgcccaagacgtgggcagagctggcccgcaccactgctgcggccgcagcaactaatccg
gtggaaagagtgaacgctgtgacgctggtgtacgagcgcgccttacgtgcatttgcctct
tcctacaagctatggagggcctacatcaggtatcgccagcaggagacccgtaggctgtgt
gggccgagcgagtggttccaggctatgcgcgaggtttatgagcgggcgttggcagagctt
ccgacgatgccgatgctctgggtcgattacatggagtttgtcgttgcctctgaagtgccg
cgtgtgacaatgacgcggcacatactagctcgtgccttagcagcactgccagcgacgcaa
catcatcatctctggagggtcgcaaagcgctggtgcgctatgcccgtcgtgccaagtgct
acagtacaggccgtctggcgactttacctgtccttccagcgctcgctgcatgcaaggcgg
gaatactttcaggtcctcgtgcagaaaggcgacttcaatgcgttcttgcaggagtgtgta
cacctggggctgcccaacaagttggacaagggcgccgtcgagcagcgtgacttgctcttt
ggcgacgtgagcttttgggagacggtgcagacggcactgcagagtaagggctggcgcttc
acaggcgatattgacccgctgcgcgagctggtcgccctcggaaaacagcgctgcgcctcc
ccggtcgagctctcaatggcctttgccattttcctttacggtcagggaaacatgcgagag
ggacgacaggaacttcaggggcttctagacgcggcacctgaggcgcagacgctgacttcg
ctttaccaccttgccgtggaggtggaagaccaactcgtggagtctttcgcggtggacccc
aatctcaagcacctcgacgacgccacgtacaaaagggtggtgcagcatctctttggtgac
ggcgacccactcagccacctcgagcgacttgtgcacgattttccgctgctcctcaaccag
gcgcagctcaggaacagcccccacaatgcggcactgtggctgaagcgtgtggagctcgtg
caggaggacgtttacgcaggccgctccacctttgacgatcttgtcgcactatatcgacag
gctattcagcagtgcactgcggggatgtcgcgtgtggatggcgcggcggcgcagctgttc
ttttcctgtgcccaggctctcattcgtggcggcaagctggacagcgctacgttggtgctc
agtgaaggggcgtggtacgtaccttttaccagtgccgcgctcaacgtgcagcttcttggt
cttcttgtggaggttcagctcatgtcttccgcgtcacccttgtcagtgagggatgcgctg
gcggagagactgaccagcggtgctcgtagtggcggttcaaagcgcggccgaaacgggctt
ctgcagtcgaatgcagcactaccccatgtggtacaccacccacacgcatggatcctgtgg
tgcgacgtgtgcgctgcctacgacgcgaccaatgcgaccgcttggcagagccttgtcgag
acgctttccagctcgcctgccttctctgctgaagccgcctgctatgtagcacacaaggcc
tacgtgtgcagacaagagtccattgccgtcatggtgctagagagagccgttgctgccacg
cggcagcaacctaccgcgcagctgtttgtgctggagcagtacctctccttcctgtacgtc
cgtgacggcgggaaagtgccgctacatcagtttcgcgaggtgttcagcctcgtgcagcaa
gccaccccggtcgccatacgcactgcaccatcggccgtcatcgacttgcacgtcagctgc
gcttacatggaggcagcgatcggcctatacgggacagctgtccgcatgatgcaggagatt
tccttagtcgctgtcgcggcactacgagggcgtgatgagtacctccgtatcctgcaggcc
atacttgagcactcgatcaccttcacggagcagcgcaagggctacgatgcggtacgcaag
tactgcggagcgctcgttcagcgcctccagcacgcacttctgctgcagcgtgttgcgctt
cactgggcctcaatcgagaagcgctctggtaacaccgcacaggcgcatcttatccttgac
gcgtgcggggacagccaggacccgtccacggagcatggagaggtctactggaggctgtgg
gagtctctctgcacaagtgtggaggagtttgagaaggtggctcggcgtcgtcagcaggcc
tcaatgcgcttcggcaagcgcgaaagtacgaaggggtcagggtaa
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