Leishmania braziliensis: LBRM_25_0170
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Entry
LBRM_25_0170 CDS
T01113
Name
(RefSeq) putative cleavage and polyadenylation specificity factor
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
lbz
Leishmania braziliensis
Pathway
lbz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lbz00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
LBRM_25_0170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbz03019
]
LBRM_25_0170
Messenger RNA biogenesis [BR:
lbz03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
LBRM_25_0170
U7-dependent histone pre-mRNA processing factors
LBRM_25_0170
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Lactamase_B
Lactamase_B_2
Beta-Casp
DUF6108
Motif
Other DBs
NCBI-GeneID:
5416106
NCBI-ProteinID:
XP_001565522
UniProt:
A4HDW4
LinkDB
All DBs
Position
25:complement(43293..45782)
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AA seq
829 aa
AA seq
DB search
MLRASAGSIRLTSVYECTTPNAPYAYLVEIDGVRILFDCGWNEEFDTSFLAKLKPYLATV
HAVILSSPHITACGALPFVLTHIAPGTFVAAAGATSKIGVHSVLHSFLYQYPNSHTFTLA
DGEGFTMTVDSIYHSFRSLREPYGGKVTVKNEDVEVNCFAVFAGRMLGGYSWTIKYQIDE
LFYCPDFSVKPSYALKSFDVPTTANIVLVSSFPFHMTVSNRTTKYEEQLKSLFKELQHTL
RGGSDVLVPVNVAGRGLEVLNILVHLLAEQGGDKYKVVLVAAQAQELLDKAGTMTEALQD
YLILDDKRLFANVLTCRSAEEVLPIQGPKICVADGASLDFGPSAELLEYFVKGNRDGADH
LIVLTEPPLPGTNATVVTAAGDGERLHFQITRRSRLSGEELEEYYIDLEHDVEQRRRELE
AQSIFQVVPDDEEDAANTKGDADDDDDDDGEWVAAAATSHGGAAEKPSTISGTTAATTAG
AGDAAGVPAKTKAATTPGLVLPPSLHYHSKHLSFPVLETASTLSAAALKRIDVAYGLPVS
EEEQVVLQKRAPARQHSDAGPEALQVENDAQRLANIPSKVSRVAVEVTRRCRVVLSDLSG
YPDALTMKSILKTKWTFAKKMVGLRGNAEDGRAFQHFCRADKSMKCGSTVFSVTSSGVPL
ELATHVYSYAVQLESSLARSLSRGLRRVRETKSKSTWEVGWVNGELSGVRAEADLVEPEA
QRRRSDRASYFLTAVTADKSQACAAQREQQGLQSGSFFVGDMDLRRLREVSRQESGLYSE
FHKKAPLLVFDEGVCVRKGADGTVTISSIATPALFDLRRTVYRQYSQVL
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
atgctacgcgcctccgcgggcagtattcggctcacttcggtgtacgagtgcactaccccc
aatgcaccctatgcctatctcgttgagatcgacggggtgcgcatcctcttcgactgcgga
tggaatgaggagtttgacacgtctttcctcgctaagctgaagccatacctggcaactgtg
catgccgtgatcctgtcgagtccgcacatcaccgcctgcggcgcccttccctttgtcctc
acccacatcgctcccggcacttttgtggcggcggccggcgccacatcgaagataggcgtg
cacagtgtcttgcactccttcttgtatcagtacccaaactcgcacaccttcaccctcgcg
gatggggaggggttcacgatgacggtggactccatctaccacagctttcgctccctccgc
gagccgtacggcggtaaggtcaccgtgaagaatgaggatgttgaggtcaactgcttcgct
gtctttgctggccgcatgctgggtggctacagctggacaatcaagtaccaaatcgatgag
ctcttctactgcccagacttctcggtgaagccgtcgtacgcgctgaagtcgtttgacgtg
ccgacaacggcgaacatcgtgcttgtgagcagctttccctttcatatgaccgtctcaaat
cggacgacgaagtacgaagaacaactgaagagcctcttcaaagaactccagcacaccctg
cgcggtggcagcgacgttctcgtgcctgttaacgtcgcaggtcgtggactggaggtgctg
aacatccttgtgcacctcttggcagagcagggcggcgacaagtacaaggttgtcctggtg
gctgcccaggcccaggagctgctcgacaaggcaggcaccatgaccgaggcgctgcaggac
tacttgattctcgatgataagcgcctctttgcgaatgtcctcacgtgccgcagcgcagag
gaggtgctcccgatccagggccccaagatctgtgtcgcggacggggcctctctggatttc
ggaccctccgcggaactactcgagtactttgtgaagggcaaccgcgacggcgccgatcac
ctcatcgtcttgacggagccgccgttgccggggacgaacgcgaccgtggtgaccgctgct
ggggacggcgagcgtctccactttcaaatcacgcgtcgtagtcgcctgagtggggaggag
ctggaggagtactatattgacctggagcacgacgtagagcagcgccggcgtgagttggag
gcgcaaagcatcttccaggttgtgccagacgacgaggaggacgctgcgaataccaaggga
gatgcggacgacgatgacgacgacgatggcgaatgggtggcggcggcggcgacgagtcat
gggggagcagctgagaagccttccaccatcagtggcaccacggctgccaccacagctggc
gcaggcgatgctgccggggtcccagcgaagacgaaggcggcgacgacccctggcttggtg
ttgccgccgtcgttacactaccactcgaagcatctgagctttcccgtgctggagacagcg
agcacgctgagcgcggcggcactgaagcgcatcgatgttgcgtacgggcttcctgttagc
gaggaggagcaggtcgtgctgcagaagcgcgcgcctgctcggcagcacagcgatgcgggg
ccagaggcgctgcaggtggagaacgatgcacagcggctcgccaacatcccatccaaggtg
tcgcgcgttgcggtggaggtgacacggcgctgccgcgttgtcctctccgacctcagcggc
tatccagacgctctcaccatgaagagcatcctgaagacaaagtggacgtttgcaaagaag
atggtcggacttcgcggcaacgccgaggatggacgggcgtttcagcacttttgccgcgcc
gacaaatccatgaagtgcgggtcgactgtcttcagtgtcacgtcgtccggcgtaccgctg
gagttggcaacgcacgtgtactcgtatgcggtgcagctagagtcgagtctcgcacgtagc
ctgtcgcgtggcctacgccgcgtccgcgagaccaagtcaaagagtacatgggaggttggg
tgggtcaacggtgagctctccggcgtgcgtgctgaagccgaccttgtggaaccagaggcg
cagcgccgtcgctccgaccgcgcctcttacttcctcactgctgtcacagcggacaagtcg
caggcgtgtgcagcacagcgggaacagcaagggctgcagagtggctccttctttgttggc
gacatggaccttcgccgcctgcgcgaagtctcgcgccaggagagtgggctgtacagcgag
tttcacaagaaggcgcccttgctggtcttcgatgaaggcgtgtgtgtccgaaaaggcgct
gacggcaccgtcaccatctcctccattgccaccccggcactgtttgatctgcgccgcacc
gtctatcgccagtactcgcaggtattgtag
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