Leishmania braziliensis: LBRM_34_3940
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Entry
LBRM_34_3940 CDS
T01113
Name
(RefSeq) U5 snRNA-associated splicing factor
KO
K12856
pre-mRNA-processing factor 8
Organism
lbz
Leishmania braziliensis
Pathway
lbz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lbz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
LBRM_34_3940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lbz03041
]
LBRM_34_3940
Spliceosome [BR:
lbz03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
LBRM_34_3940
Complex C
U5 SnRNP specific factors
LBRM_34_3940
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
U5_2-snRNA_bdg
PRO8NT
RRM_4
PROCT
DUF5480
Motif
Other DBs
NCBI-GeneID:
5419454
NCBI-ProteinID:
XP_001568496
UniProt:
A4HN66
A0A3P3ZHR1
LinkDB
All DBs
Position
35:1481160..1488437
Genome browser
AA seq
2425 aa
AA seq
DB search
MSAAAPPGFAEDVSGPPGFEDEDDFADVNPALLAEMEKEEQKESRKRQILTWQRMNTERY
GFRSAYRAAVGEKDLMPPEFIRKVVKDNGDLGGKRFKSERKLCVGMLPYMPLALFKLLEN
MPMPWEEARYVTVVYHVGGVLTIVDDTPTVAEPLYLSRWGSMWTKMRANKVELLQEGGGF
RRAVHKGDENEPPLDFADYLMDRVPPPPVLDDLDEEDNAGIAGWFYDPFPRLVAPNQIRG
PRRPNGYYFTIDVIEALYRNASPILPTLDDRSYFYLWDLKSFYSAKAMHLSIPRGPKFEA
PPAIRMKQDEDDDWTEFNDLRRIIHRDNPRKPRFTMLTERQIAFPFLYGSVVDGVELGPY
HYPATVRVENDDPELPCFTFHPSLNAIKAVERNYTDVPRAQAVLCSSTWDRAGVQHAEGA
VDVPLELPDDFEPFLAALPLEQPNTKTGLSLLFAPAPYNSFEGGMKRRIDVPLCDKWYQD
PPDLLTTDDRDKILRSYTQLLKHHVKRSLQHTVRQRGSAAAASAAAADMSAIQEKHRLQK
MAEMRYFSKTRMEWLEAALQVMRQGHNMLVQLINMKCLPYVHIDYNFEAKPTRTLTTKEI
KKSRLGPAFHMIRELLGFMKRLIDMHVMYRLGSTDALQLADATQYLFSHVGVLTGVYRYK
LRALRQIKRSRDLKHMLYSKFNVGGVPSGPGNGFWGPAWRVWVFFMRGMTPLLQRYLSNL
TDRVLHGRVQKGKTTGKKITRQRVEPDKDVNIKEAFRRELREMLPDSVKGSVIVTMDQHM
NEAFRHWRAGIPWSVPGLARPLADLVGKYVKLRSEEYIRTTQLQRRRIAEGDTVDKQAFM
KNLGRLTRLKLMDEQRRQRRYMTGEDAATILSPDEATEIYRMMANWLNDRGFKKIPFPDP
SKTAELSLLQLSLNRLRDQHNIANRLTANQREEQARIEESFNAPHEALSRIVDALAHQRR
FKNVEVEYMDNFSHLYPLYTVVPQEKMIDSFLDQYLWYKTMNVQRLFPNWVKPSDVEPLP
QLLYKWCEGINNIPDLWDVSHDESVVLLHSNLEDAFYDNVDWTFFRPMLELIMDKSLVDY
IVSRHDVVVEFKDMSYHHYKGLIRGFMFSPFLAQYWGLVMDVLLLGTQRSKEIAGTAVKP
NPFMSFFRDPYLATSHPIRAYCRYKNEVYIVIRYTKTEADEVRRRYLEETKSDPEMHAIN
ASVYGFKNAKEWPRDARMRLFLSDVNLARAVLWEFRGRLPPSMATINDANSFVSVYSKDN
PNLLFEMAGFSVRLLPVVRTEAEILENESMWSLRNNTTKDISCRAFLQVTKEHINMIRNK
ARRTVMMVGSSTFHSIAAKWNALITEIVPYYREAILGTEELQAILARAEHRMQARVMMAL
NSRAKSRFPPAMFYAPSDLGGLGMLSVGHSLIPAKDTIYSRTTSTGVQFFYAGLTNEEGI
PIPNVLQYYTPWEAEIKESEKAWLEFRTREREAKARGGRVSLDDIEDIIDKGIPRIRVRF
SRHAPLFHFDTGFRVRMEFQRYLAGKYLKNWWFHMEHDGNICGGVMERYRADMNNALGGV
EAILEHSLFKGTGFPSWEGIEFDRSGGFENTKKDTKLAKQQRAGLSKVPNQRFALWWSPT
INRSDIQAGFESKVETTGVFMCGKLETIKKSLIKIFSGSLWEKSHGAVVNDVASKLKDSL
IDLGAASITLQQQHPQKSYTFTSSAADVILVSAARWSVPSKPTSLADEVGDVYQQNTTSK
FWIDVQLRWGNYDSHNIAEYARKKFYEYSTARMYPFPAGIVVAIDLAYNCHSAFGYWIPG
MKLFMSKLMPVIMKNNITLNTLRDRMKRDLGLFSSAPTEASLSDTNIAELFSSGMRTWIV
DDSATYVTSEQPTPDGGKKFKSENGAVLVFEPVSGSLKMSVVHRSVFAGQKRRSKLAREK
AAEEIASWLRSCPPSERPGKIIVTRSRFRQTLHNMLVLDYPNIIIGQSDLNLPLPMVLRH
SRLVELRIAAMESKGWEFCIYDDWQQSLQFQPITCFNLLNLVLRGYHINLQRTRQILVPD
LHVEVSAAHFWPTYATRQEWEQVSIRLQEMIIADAARRMNVSPKDFTEKEKEGILLGKRM
TNLEIQQEEIKEIEAMRRTKLVEAQTVSVVTSSGDVVKRKVKAAFDFGATAFNNNWRPRS
LADAAFLDENTTITFDAAGATGASDQLIFSEDAVQKLLACCDVKVQCCAYMFGHALPDSP
NIKEVLCVMIPPQFGTAVEARTPPRIPYDAAPLREANLSFLGLMRIGESEAQLTSHDLAL
QARALIANEGMVPQGFLTAVLEMSEEGVIVRCYSTTADGIAWAQVEYERLLKKTPEATDP
VFSSPCRGTLSSEVRSFFLVPVERVWNYYFKGALWRENTEYDVVVDLPLHFFDALHRPDH
FLNFTRMGDDAEVMDEADPNDVFGS
NT seq
7278 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcagcggctcctcctgggtttgccgaggacgtcagcggccctcctggctttgag
gacgaggatgattttgccgatgtcaaccccgccctgctcgcggagatggagaaggaagag
cagaaggagtcaaggaagcggcagatccttacatggcagcgcatgaacacagagcggtac
gggtttcgctccgcgtaccgggcggcagtgggggagaaagacttgatgcctccagagttc
atccgcaaggtggtaaaggacaacggtgacctcggcggaaagcgcttcaagtcagagcgc
aagctatgcgtgggcatgctgccctacatgccactggctttgttcaaactcctggaaaac
atgccaatgccttgggaagaggcgcgctacgtgaccgtagtataccacgtcggcggcgtt
ctcacgattgtggatgacacccccacggtggcggagccgctctatctgtcgcggtggggc
tctatgtggacaaagatgcgcgccaacaaggtagagctcctacaagagggtggtggcttc
aggcgcgcggtgcacaaaggagacgaaaacgagccgccactggacttcgccgactaccta
atggaccgcgtgccgccaccgccggtgctcgatgatctcgatgaggaggacaacgctggc
attgcgggctggttttacgaccctttcccacgcctggtggctcccaaccagatccgtggc
cctcggcggccgaatgggtactacttcaccattgatgtgatagaggcgctgtaccgtaac
gcgtcgcccattctgccgacgctcgatgaccgcagctacttttacctctgggatctcaag
tccttctactctgccaaagcgatgcacttgtccatcccccgcggcccaaagttcgaggcc
ccacctgccattcgtatgaagcaggacgaggacgacgactggacggagttcaacgacctg
cgccgcatcatccaccgcgacaacccacgcaagccgcgctttacgatgctgacggagcgg
cagattgcctttccgttcctgtatggctcggtggtagacggagtcgagctgggaccgtat
cactacccggcaacggtgcgcgtcgaaaacgatgaccccgagctgccgtgcttcacgttc
cacccctcgctgaatgcaatcaaagcggtggagaggaattacaccgatgtgccgcgcgcg
caggctgtgttgtgctcctctacctgggatcgcgcgggcgtccagcatgctgaaggtgcc
gtggacgtaccgttggagctgccggacgactttgagccgtttctggctgcgctcccgctg
gagcagcccaacacgaagacaggcctgtcgctgctcttcgctccggcgccttacaattcc
tttgagggaggcatgaagcggcgcatcgatgtgccgctgtgcgataagtggtaccaggat
ccaccagacctgctcacgacggacgaccgcgacaaaattctgcgcagttacacccagctg
ctcaagcaccatgtgaagcggtctctgcagcacaccgtgcgccaacggggcagtgccgcc
gccgcatcagcggcagcggcggacatgagcgccatacaggagaagcatcgtctgcagaag
atggcagagatgcggtacttttccaagacacgcatggagtggctagaagcggcgctgcag
gtgatgcggcagggtcacaacatgcttgttcagctcatcaacatgaagtgcctgccatat
gtgcacattgactacaacttcgaagcgaagccgacccgcacgctgacgacgaaggagatc
aagaagagccgccttggccccgcgtttcacatgatccgcgagttactgggcttcatgaag
cggctcattgacatgcatgtgatgtatcggctagggtcgacggatgcgctgcagttggcg
gacgctacccagtacctcttctcccacgttggcgtgctgactggcgtgtaccgctacaag
ctgcgggcgttacggcagatcaagcggagtcgtgacctcaagcacatgctgtatagcaaa
ttcaacgttggcggcgtgcccagtgggcctggcaacggtttctggggtcccgcgtggcgc
gtgtgggtattctttatgcgtggcatgacgccgctactgcagcgctacctgagcaacctg
accgatcgcgtgctgcacggccgtgtgcagaaggggaagactaccggcaagaaaatcacg
cgtcagcgggtcgagccagacaaggacgtgaacatcaaggaagcgttccgccgtgagctg
cgcgagatgctgccggacagcgtcaagggttcggtcattgtgacgatggaccagcacatg
aacgaggctttccggcactggcgcgccggcataccgtggagcgtgcctgggcttgcgagg
ccactggcggacctcgttggcaagtacgtgaagctgcgctcggaggagtacatccgcacg
acgcagctgcaacgacgtcgcattgcggagggggatacggtagacaagcaggccttcatg
aaaaacctagggcgcttgacgcggctgaagctcatggatgagcagcgccgccagcgtcgg
tacatgactggcgaggacgccgccacgattctgtcgcccgatgaggcgacagagatttac
cgcatgatggcgaactggctaaatgaccgcggcttcaagaagatccccttcccagacccg
tccaagacagcagagctgtcgttactgcagctttccctcaatagactgcgtgaccagcac
aacatcgcgaaccggcttacggcgaaccagcgtgaggagcaggctcgcatcgaggagtcc
ttcaacgcgccccacgaggccctatccaggattgtagacgccctggctcaccaacgccgc
ttcaagaacgtcgaggtagagtacatggacaacttttcacacctatacccgctctacact
gtcgtgccacaggagaagatgatcgactccttcctcgatcagtacctctggtacaagacc
atgaatgtgcagcgcctcttcccaaactgggtgaagccgtccgatgtggagccgctgccg
cagctgctgtacaagtggtgtgagggcattaataacatccctgacctctgggacgtgtcg
cacgacgagtctgtggtgctgttgcacagcaacttggaggatgccttctatgataacgtg
gactggaccttcttccgtccgatgctggagctgatcatggacaagtctcttgtcgactac
attgtgagtcggcacgatgtagtggtggaattcaaggacatgagttaccatcactacaag
ggactgatccgcggcttcatgttttcgccattcctggcgcagtactgggggctcgtgatg
gatgtgctgctgctcggcacacaacgaagcaaggagatagccggcacggcggtgaagcca
aacccattcatgtctttcttccgcgatccctacctcgccacgtcgcacccgattcgcgcg
tactgcaggtacaagaacgaggtctacattgtgatacgctacaccaagacggaggcggat
gaggtgcgtcgtcgctacctggaggagactaagtcggatccggagatgcatgccatcaac
gcatcagtctacggattcaagaacgcgaaggagtggccacgcgacgcacggatgcgtctt
ttcctgtccgacgtaaacctggcacgcgcggtgctgtgggagtttcgcggccgcctgcca
ccgtcgatggcgaccatcaatgacgcaaacagcttcgtcagcgtctactctaaggacaac
cccaacctgctctttgaaatggcaggcttctctgtgcgactgctgccggtggtgcggacc
gaggcggaaatcctcgagaacgagtctatgtggagtctgcgcaataacaccaccaaggac
atatcctgccgagccttcctgcaggtgacgaaggagcacatcaacatgatccgcaacaag
gcgcgccgcactgtaatgatggtcggcagttccacctttcacagcattgcggcaaagtgg
aacgcgctgattacggagattgtgccgtactatcgcgaggcgattctcgggacggaggag
ttgcaggcaatcctggcgcgcgcggagcaccgcatgcaggcacgcgtgatgatggcgctg
aattcgcgcgccaagtctcgatttccaccggcaatgttctacgccccctctgacctcggc
ggcctcggcatgctctccgttggacactccctcattcctgcgaaggacaccatatattca
aggacaaccagcaccggcgtccagttcttctatgccggtcttaccaatgaggagggtatc
cctatccccaacgtgctgcagtactacacgccatgggaagcagagattaaggagagcgag
aaggcatggctggaattccgcacccgcgagcgggaggccaaggcgcgtggtggtcgcgtg
tcgttggacgacatcgaggacatcatcgacaagggcatcccgcgcatccgcgtgcgcttc
tcacgacacgcaccgctcttccactttgacaccggcttccgggtccgcatggagttccag
cgatacctggctggcaagtacctgaagaactggtggtttcacatggagcacgacggcaac
atctgcggcggtgtgatggagcgctaccgcgctgacatgaacaacgccctcggtggggtt
gaagcgattttggagcacagtcttttcaaggggacgggcttcccatcatgggagggcatt
gagtttgaccgatctggcggcttcgaaaacacaaagaaggatacaaaactggcgaagcag
cagcgtgctggtttgagcaaggtgccgaaccagcggtttgcactgtggtggagtcctacg
atcaaccgctccgacatccaggccggcttcgagtcgaaggtggagacgacaggtgtcttc
atgtgtggtaagctggagactatcaaaaagtccctcatcaagatcttcagcggctctctc
tgggagaagtcgcacggcgccgtcgtgaacgatgtagcaagcaagctaaaggacagcctc
atcgacctcggcgcggcctccataacgttgcaacagcagcacccacaaaaatcctacacc
tttacgagctccgctgccgatgtcatcttggtgagcgcggcacgctggtcggtgccgtcg
aagccgaccagtctcgccgacgaggtcggcgatgtgtaccaacagaacacaacctcgaag
ttctggatcgatgtgcagctgcgatggggaaactacgatagccacaacatcgccgagtac
gcgaggaagaagttctacgagtactcaacggcgcgcatgtatccgtttcctgctggcatc
gtcgttgcgatcgacctggcgtacaactgccacagcgcgtttggctactggatccctggc
atgaagttgttcatgagtaagctgatgcccgtgattatgaagaacaacataaccctcaac
acgctgcgcgaccgcatgaagcgtgacctaggactgttcagctctgccccgaccgaggcg
agcctgtccgacacaaacattgctgagctgttctccagtgggatgcgcacgtggatcgtg
gacgacagcgccacgtacgtgacgagcgagcagccgaccccggacggcggcaagaagttc
aagtccgagaatggtgctgttctggtctttgagcccgtctctggttctttgaagatgagt
gtagtgcaccggagcgtctttgccgggcagaagcgtcgctcaaagctggcgcgcgagaag
gcagcggaagagatcgcgtcgtggctgcgtagctgcccgcctagcgagcgtccgggcaag
atcatcgtcacccgctcacgtttccgccagacgctgcataacatgttggtactagactac
ccgaacataatcattggccaaagtgacttgaaccttccgctgccgatggtgctgcgtcac
agccgcctcgttgagctgcgcattgcggcgatggaaagcaagggatgggagttctgcatc
tacgacgactggcagcagagtctgcagttccagccgatcacgtgcttcaacctactgaat
ctggtcttgcgtggataccacatcaacctgcagcgcacccggcagattctcgtgcctgat
ctgcacgtcgaggtaagcgcggctcacttctggcccacgtacgcgacccgccaggaatgg
gagcaggtgtccattcggctacaggagatgatcatcgctgacgccgcgcgccgcatgaac
gtaagcccgaaggattttacagaaaaggagaaggaggggattctgctgggcaagcgaatg
accaacttggagattcagcaggaggagataaaggaaattgaggccatgcggcgcacaaag
cttgtagaggcacagacggtcagcgttgtcacgagcagcggcgacgtcgtgaagcgcaag
gtgaaggccgcctttgatttcggagcgacggcgtttaacaacaactggcgcccccgctcc
ttggccgatgccgcctttcttgacgagaacaccaccatcaccttcgacgccgccggcgcc
actggggcaagcgaccagctcatcttctccgaggatgcggttcagaagttgctggcgtgc
tgcgacgtcaaggtgcagtgctgtgcgtacatgtttggccatgctctgccagactcgcca
aacatcaaggaggtgctatgtgtcatgatcccgccacagtttgggacggctgtcgaggcc
cgcacaccgccccgcattccatatgacgcggcgccactgcgggaggcgaacctgtctttt
ttgggactcatgaggattggcgagagtgaggcgcagctgacctcgcacgacctcgcgctc
caggcgcgtgcgctgatcgcgaacgaggggatggtgccgcaagggtttctgactgccgtt
ctggagatgtcggaggagggggtaatagtgcggtgctacagcaccaccgcagacggcatt
gcatgggcgcaggtcgagtacgagcgactgctcaagaagactccggaggcaaccgacccg
gtgttctcctctccgtgccgtggcaccctttcctcagaggtgcgaagctttttcctggtg
ccggtagagcgggtctggaactactacttcaagggggcactgtggcgcgagaacaccgag
tacgacgtcgtcgtcgacttgccgttgcacttcttcgacgcactccaccgcccggaccac
ttccttaactttactcgcatgggtgacgacgccgaggtgatggatgaggcagacccaaac
gacgtgttcggcagctag
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integrated database retrieval system
