Leishmania braziliensis: LBRM_34_4980
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Entry
LBRM_34_4980 CDS
T01113
Symbol
PABP1
Name
(RefSeq) putative polyadenylate-binding protein 1
KO
K13126
polyadenylate-binding protein
Organism
lbz
Leishmania braziliensis
Pathway
lbz03015
mRNA surveillance pathway
lbz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lbz00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
LBRM_34_4980 (PABP1)
09123 Folding, sorting and degradation
03018 RNA degradation
LBRM_34_4980 (PABP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbz03019
]
LBRM_34_4980 (PABP1)
03041 Spliceosome [BR:
lbz03041
]
LBRM_34_4980 (PABP1)
Messenger RNA biogenesis [BR:
lbz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
LBRM_34_4980 (PABP1)
mRNA cycle factors
Stress granule specific factors
LBRM_34_4980 (PABP1)
Spliceosome [BR:
lbz03041
]
Complex C
Other components
Complex C specific factors
LBRM_34_4980 (PABP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_7
DUF4523
Pkinase_C
Motif
Other DBs
NCBI-GeneID:
5419558
NCBI-ProteinID:
XP_001568596
UniProt:
A4HNG6
A0A3P3ZHN1
LinkDB
All DBs
Position
35:1868676..1870340
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AA seq
554 aa
AA seq
DB search
MTTTVQETAAPVAQQPQVSKPMQIASIYVGDLDAAINEPQLVELFKPFGTILNVRVCRDI
ITQRSLGYGYVNFDNHHSAERAIESMNFRRVGDKCVRLMWQQRDPSLRYSGNGNVFVKNL
EKDVDSKSLHDIFTKFGSILSCKVMEDEEGKSRGYGFVHFKDEISAKDAIVKMNGAADHA
SEDKKALYVANFIRRNARLAALVANFTNVYIKQVLPTVNKEVIENFFAKFGGITSAAACK
DKSGRVFAFCNFEKHDDAVKAVEAMHDHHIDGITAPGEKLYVQRAQPRSERLIALRQKYM
QHQSLGNNLYVRNFDPEFTGADLLELFKEYGDVKSCRVMMSESGASRGFGFVSFSNADEA
NAALREMNGRMLNGKPLIVNIAQRRDQRYTMLRLQFQQRLQMMMRQMHQPMPFVGGQGRP
MRGRGGRQQQGGRAQGHPMPMPSPQQSQGFATPSAVGFVQATPKHSPGQVPETPPLPPIT
PQELESMSPQEQRAALGDRLFLKVYEIAPELAPKITGMFLEMNPKEAYELLNDQKRLEER
VTEALCVLKAHQTV
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atgaccacgactgtccaggagactgctgccccggtggcacaacagccgcaggtgagcaag
ccgatgcagattgcttccatctacgttggggaccttgatgccgccatcaacgagccgcag
ctggtagagttgttcaaaccgtttggcaccatcctgaacgtgcgtgtatgtcgcgacatc
atcacccagcgctcgctgggctatggctacgtcaacttcgacaaccaccacagcgcggag
agggcgatcgagtcgatgaacttcagacgcgtcggcgacaagtgtgtgcgcctcatgtgg
cagcagcgcgacccctctctccgctacagtggcaacggcaacgtgttcgtgaagaacctg
gagaaggatgttgacagcaagagcctgcacgacatcttcacgaagttcggttccattctc
tcctgcaaggtaatggaagacgaagagggcaagagccgcggctacggcttcgttcacttc
aaggacgagatctctgccaaggacgcgattgtgaagatgaacggtgctgccgatcacgcc
tcggaggacaagaaggcactgtacgtggccaacttcattcgccgcaacgctcgccttgct
gcgctcgtggcaaacttcacgaacgtgtacattaagcaggtgctgccgaccgtgaacaag
gaggtaatcgagaatttctttgcaaagttcggcggcatcacgtccgctgcggcctgcaaa
gacaagagcggccgtgtgttcgccttctgcaacttcgagaagcatgacgacgccgttaag
gcggttgaggcgatgcacgaccaccacatcgacggcatcactgctcctggcgagaagttg
tatgtgcaacgtgcccagccccgcagcgagcgcctcatcgcccttcgccagaagtatatg
cagcaccaatcgcttggcaacaacctgtacgttcgcaatttcgatcccgagttcacaggc
gccgacttgcttgagctcttcaaggagtatggcgatgtcaagagctgccgcgtgatgatg
agcgagagtggcgcgagtcgcggcttcggtttcgttagtttctcgaacgccgacgaggcc
aacgccgcgctgcgcgagatgaacggccgcatgctgaatggcaagcccctcattgtgaac
attgcccagcgccgcgaccagcgctacacgatgctgcgcctgcagttccagcagcgtctg
cagatgatgatgcgccagatgcaccaaccgatgccgttcgtcggcggccagggccgtccg
atgcgtggtcgcggtggccgacagcagcagggcggtcgcgcgcagggccatccaatgccg
atgccctccccgcagcagtcgcagggttttgccacgccgtcggctgtcggcttcgtgcag
gcgacaccgaagcactctccaggtcaggttcccgagacgccgcctctgccgccgatcacg
ccgcaggagctggaaagcatgtcaccgcaggagcagcgcgccgctttgggtgaccgtctc
ttcctcaaggtatacgaaatcgcgccggagctggcgccgaagattacgggtatgttcctg
gagatgaaccccaaggaggcgtacgaacttctcaacgatcagaagcgtctcgaggagcgc
gtgacagaggccctctgcgtactcaaggcgcaccagacggtatga
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